Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   K5P75_RS08900 Genome accession   NZ_CP082120
Coordinates   1862920..1864347 (-) Length   475 a.a.
NCBI ID   WP_072132999.1    Uniprot ID   -
Organism   Escherichia coli strain PC-NDM34     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1857920..1869347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5P75_RS08870 (K5P75_08870) yeeZ 1857975..1858799 (+) 825 WP_032202495.1 SDR family oxidoreductase -
  K5P75_RS08875 (K5P75_08875) yeeY 1858845..1859774 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  K5P75_RS08880 (K5P75_08880) yoeI 1859989..1860051 (+) 63 WP_010723108.1 membrane protein YoeI -
  K5P75_RS08885 (K5P75_08885) plaP 1860041..1861399 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  K5P75_RS08890 (K5P75_08890) tsuA 1861578..1862636 (+) 1059 WP_000492312.1 thiosulfate utilization transporter TsuA/YeeE -
  K5P75_RS08895 (K5P75_08895) tsuB 1862650..1862877 (+) 228 WP_000985278.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  K5P75_RS08900 (K5P75_08900) sbcB 1862920..1864347 (-) 1428 WP_072132999.1 exodeoxyribonuclease I Machinery gene
  K5P75_RS08905 (K5P75_08905) dacD 1864556..1865722 (+) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  K5P75_RS08910 (K5P75_08910) sbmC 1865841..1866314 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  K5P75_RS08915 (K5P75_08915) yeeA 1866512..1867570 (+) 1059 WP_001200891.1 FUSC family protein -
  K5P75_RS08920 (K5P75_08920) tmaR 1867742..1868071 (+) 330 WP_000450409.1 DUF496 family protein -
  K5P75_RS25630 (K5P75_08925) - 1868172..1868354 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  K5P75_RS25775 (K5P75_08930) - 1868426..1868554 (+) 129 Protein_1748 transposase domain-containing protein -
  K5P75_RS08935 (K5P75_08935) - 1868843..1868935 (-) 93 Protein_1749 DUF957 domain-containing protein -
  K5P75_RS08940 (K5P75_08940) yeeW 1868969..1869163 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54485.76 Da        Isoelectric Point: 5.4720

>NTDB_id=526305 K5P75_RS08900 WP_072132999.1 1862920..1864347(-) (sbcB) [Escherichia coli strain PC-NDM34]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=526305 K5P75_RS08900 WP_072132999.1 1862920..1864347(-) (sbcB) [Escherichia coli strain PC-NDM34]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581