Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   B657_RS16815 Genome accession   NC_018520
Coordinates   3184243..3184887 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis QB928     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3179243..3189887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B657_RS16780 (B657_31610) mrpB 3180435..3180866 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  B657_RS16785 (B657_31620) mrpC 3180866..3181207 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  B657_RS16790 (B657_31630) mrpD 3181200..3182681 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  B657_RS16795 (B657_31640) mrpE 3182687..3183163 (+) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  B657_RS16800 (B657_31650) mrpF 3183163..3183447 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  B657_RS16805 (B657_31660) mnhG 3183431..3183805 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  B657_RS16810 (B657_31670) yuxO 3183844..3184224 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  B657_RS16815 (B657_31680) comA 3184243..3184887 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  B657_RS16820 (B657_31690) comP 3184968..3187277 (-) 2310 WP_003242894.1 two-component system sensor histidine kinase ComP Regulator
  B657_RS16825 (B657_31700) comX 3187292..3187459 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  B657_RS16830 (B657_31710) comQ 3187447..3188346 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  B657_RS16835 (B657_31720) degQ 3188531..3188671 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  B657_RS22575 - 3188893..3189018 (+) 126 WP_003228793.1 hypothetical protein -
  B657_RS16840 (B657_31730) - 3189132..3189500 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=52624 B657_RS16815 WP_003220716.1 3184243..3184887(-) (comA) [Bacillus subtilis QB928]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=52624 B657_RS16815 WP_003220716.1 3184243..3184887(-) (comA) [Bacillus subtilis QB928]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment