Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   K6124_RS11675 Genome accession   NZ_CP082103
Coordinates   2370981..2372408 (+) Length   475 a.a.
NCBI ID   WP_302500292.1    Uniprot ID   -
Organism   Escherichia coli strain MS15046     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2365981..2377408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6124_RS11635 (K6124_11560) yeeW 2366165..2366359 (+) 195 WP_000988601.1 DUF5983 family protein -
  K6124_RS11640 (K6124_11565) - 2366405..2366485 (+) 81 Protein_2296 hypothetical protein -
  K6124_RS26660 (K6124_11570) - 2366774..2366947 (-) 174 WP_032082634.1 transposase domain-containing protein -
  K6124_RS26665 (K6124_11575) - 2366974..2367156 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  K6124_RS11655 (K6124_11580) tmaR 2367257..2367586 (-) 330 WP_000450409.1 DUF496 family protein -
  K6124_RS11660 (K6124_11585) yeeA 2367758..2368816 (-) 1059 WP_001200890.1 FUSC family protein -
  K6124_RS11665 (K6124_11590) sbmC 2369014..2369487 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  K6124_RS11670 (K6124_11595) dacD 2369606..2370772 (-) 1167 WP_001297905.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  K6124_RS11675 (K6124_11600) sbcB 2370981..2372408 (+) 1428 WP_302500292.1 exodeoxyribonuclease I Machinery gene
  K6124_RS11680 (K6124_11605) plaP 2372482..2373840 (-) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  K6124_RS11685 (K6124_11610) yoeI 2373830..2373892 (-) 63 WP_010723108.1 membrane protein YoeI -
  K6124_RS11690 (K6124_11615) yeeY 2374107..2375036 (-) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  K6124_RS11695 (K6124_11620) yeeZ 2375082..2375906 (-) 825 WP_000754733.1 SDR family oxidoreductase -
  K6124_RS11700 (K6124_11625) yoeB 2375989..2376243 (-) 255 WP_000767822.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  K6124_RS11705 (K6124_11630) yefM 2376240..2376491 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  K6124_RS11710 (K6124_11635) hisL 2376774..2376824 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54472.76 Da        Isoelectric Point: 5.4720

>NTDB_id=526209 K6124_RS11675 WP_302500292.1 2370981..2372408(+) (sbcB) [Escherichia coli strain MS15046]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYTLRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=526209 K6124_RS11675 WP_302500292.1 2370981..2372408(+) (sbcB) [Escherichia coli strain MS15046]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATACCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGAGAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581