Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   JJN14_RS05605 Genome accession   NZ_CP067992
Coordinates   1157150..1158952 (-) Length   600 a.a.
NCBI ID   WP_201058086.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V7-A3     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1152150..1163952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJN14_RS05590 (JJN14_05590) ftsW 1154047..1155270 (-) 1224 WP_120770130.1 cell division peptidoglycan polymerase FtsW -
  JJN14_RS05595 (JJN14_05595) prsA 1155431..1156369 (-) 939 WP_020901794.1 peptidylprolyl isomerase PrsA -
  JJN14_RS05600 (JJN14_05600) - 1156435..1157148 (-) 714 WP_201058085.1 O-methyltransferase -
  JJN14_RS05605 (JJN14_05605) pepF 1157150..1158952 (-) 1803 WP_201058086.1 oligoendopeptidase F Regulator
  JJN14_RS05610 (JJN14_05610) coiA 1158971..1159924 (-) 954 WP_201058087.1 competence protein CoiA Machinery gene
  JJN14_RS05615 (JJN14_05615) - 1160002..1160379 (-) 378 WP_033688727.1 type II toxin-antitoxin system HicB family antitoxin -
  JJN14_RS05620 (JJN14_05620) - 1160407..1160595 (-) 189 WP_201058088.1 type II toxin-antitoxin system HicA family toxin -
  JJN14_RS05625 (JJN14_05625) tehB 1160713..1161573 (-) 861 WP_201058089.1 SAM-dependent methyltransferase TehB -
  JJN14_RS05630 (JJN14_05630) smpB 1161588..1162055 (-) 468 WP_001051750.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69951.80 Da        Isoelectric Point: 4.4837

>NTDB_id=526157 JJN14_RS05605 WP_201058086.1 1157150..1158952(-) (pepF) [Streptococcus mitis strain S022-V7-A3]
MVLQRNEINEKDTWDLSTIYPTDQAWEEALKDLTEQLEKVNQYEGHLLDTADSLLEITEFSLEMERQMEKLYVYAHMKND
QDTREAKYQEYYAKAMTLYSQLDQAFSFYEPEFMEISEKQYADFLEAQPKLQVYQHYFDKLLQGKDYVLSQREEELLAGA
GEIFGSASETFAILDNADIVFPYVLDDDGEEVQLSHGTYTRLMESKNREVRRGAYQALYATYEQFQHTYAKTLQTNVKVQ
NYRAKVRNYKSARHAALAANFVPESVYDNLVAAVRKHLPLLHRYLELRSKILGISDLKMYDVYTPLSSVEYSFTYQEALK
KAEDALAVLGEDYLSRVKRAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDNLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNNFLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSDF
LNKLYADLNQEYYGLSKEDNPEIQYEWARIPHFYYNYYVYQYSTGFAAASALAEKIVHGSQEDRDRYIDYLKAGKSDYPL
NVMRKAGVDMEKEDYLNDAFAVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=526157 JJN14_RS05605 WP_201058086.1 1157150..1158952(-) (pepF) [Streptococcus mitis strain S022-V7-A3]
ATGGTATTACAAAGAAATGAAATAAATGAAAAAGATACATGGGATCTATCAACGATTTACCCAACTGACCAGGCTTGGGA
AGAAGCCTTAAAAGATTTAACAGAACAATTGGAGAAAGTAAACCAGTATGAAGGACATCTCCTGGATACTGCGGATAGCC
TACTAGAAATCACTGAATTTTCTCTTGAGATGGAACGCCAAATGGAGAAGCTTTACGTTTATGCTCATATGAAGAATGAC
CAAGACACACGTGAAGCCAAGTACCAAGAGTACTATGCCAAGGCCATGACTCTCTATAGCCAGCTAGACCAAGCCTTTTC
ATTCTATGAACCTGAATTTATGGAAATCAGTGAAAAGCAGTATGCTGACTTTTTAGAAGCTCAACCAAAATTGCAGGTTT
ATCAACACTATTTTGACAAACTTTTACAAGGAAAAGACTACGTTTTATCACAACGTGAAGAAGAATTATTGGCTGGAGCT
GGAGAAATCTTTGGTTCGGCAAGTGAAACCTTCGCTATCTTGGACAATGCGGATATTGTGTTCCCTTATGTCCTCGACGA
TGATGGTGAGGAAGTGCAGCTCTCTCATGGGACTTACACACGTTTGATGGAATCTAAAAATCGTGAGGTTCGTCGTGGTG
CCTACCAAGCTCTTTATGCGACTTATGAACAATTCCAACATACCTATGCCAAAACCTTACAAACAAATGTTAAGGTTCAA
AACTACCGTGCCAAAGTTCGCAACTACAAGAGTGCGCGTCATGCAGCCCTAGCGGCCAATTTTGTTCCAGAGAGTGTTTA
TGACAATTTGGTAGCAGCAGTTCGCAAGCACTTGCCACTCTTGCATCGTTACCTTGAGCTTCGTTCAAAAATCTTGGGGA
TTTCAGACCTCAAGATGTACGATGTCTACACGCCACTTTCATCTGTTGAATACAGTTTCACCTACCAAGAAGCCTTGAAA
AAAGCTGAAGATGCCTTGGCAGTCTTGGGTGAGGATTACTTGAGCCGTGTTAAACGTGCCTTCAGCGAGCGTTGGATTGA
TGTTTATGAAAATCAAGGCAAGCGTTCAGGGGCTTACTCTGGTGGTTCTTACGATACCAATGCCTTTATGCTTCTTAACT
GGCAGGACAATCTAGACAATCTCTTTACCCTTGTTCATGAAACAGGTCATAGTATGCATTCAAGCTATACTCGTGAAACT
CAGCCTTATGTTTACGGAGATTATTCTATCTTCTTGGCTGAGATTGCATCAACTACCAATGAAAATATCTTGACGGAGAA
ATTATTGGAAGAAGTGGAAGATGATGCAACGCGCTTTGCTATTCTCAATAACTTCCTAGATGGTTTCCGTGGAACAGTTT
TCCGTCAAACTCAATTCGCTGAGTTTGAACACGCTATCCACCAAGCAGACCAAAACGGGGAAGTCTTGACCAGCGATTTC
CTAAACAAACTCTACGCAGACTTGAACCAAGAGTATTATGGATTGAGCAAGGAAGATAATCCTGAAATCCAATATGAGTG
GGCCCGCATTCCACACTTCTACTATAACTACTATGTATATCAATATTCAACTGGTTTTGCAGCAGCCTCAGCCTTGGCTG
AAAAGATTGTTCATGGTAGTCAAGAAGACCGTGACCGTTATATCGACTACCTCAAGGCAGGGAAGTCTGACTATCCACTC
AATGTCATGAGAAAAGCTGGTGTTGATATGGAGAAGGAAGATTACCTCAACGATGCCTTTGCAGTCTTTGAACGCCGTTT
AAATGAGTTTGAAGCCCTTGTTGAAAAATTGGGATTGGCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

67.114

99.333

0.667