Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   JJN14_RS02050 Genome accession   NZ_CP067992
Coordinates   409913..410644 (+) Length   243 a.a.
NCBI ID   WP_000889954.1    Uniprot ID   F9HLZ7
Organism   Streptococcus mitis strain S022-V7-A3     
Function   export ComS (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 407666..409014 409913..410644 flank 899


Gene organization within MGE regions


Location: 407666..410644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJN14_RS02040 (JJN14_02040) - 409138..409425 (-) 288 WP_000777754.1 hypothetical protein -
  JJN14_RS02045 (JJN14_02045) - 409435..409845 (-) 411 WP_201058766.1 HIT family protein -
  JJN14_RS02050 (JJN14_02050) pptA 409913..410644 (+) 732 WP_000889954.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27098.58 Da        Isoelectric Point: 4.6989

>NTDB_id=526142 JJN14_RS02050 WP_000889954.1 409913..410644(+) (pptA) [Streptococcus mitis strain S022-V7-A3]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLTPYSGSININGLTLQEDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFDRVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAIADLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EEL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=526142 JJN14_RS02050 WP_000889954.1 409913..410644(+) (pptA) [Streptococcus mitis strain S022-V7-A3]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTCCATGTCCCTGTCTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGTAAATCGACGACTATCAATGAGATTATCGGTCTGTTGACACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACCCTGCAAGAAGATGCGACAAGTTACCGCAAGCAAATTGGTTACATTCCT
GAGACACCTAGCTTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCCATGGCTTATGGTATTGAGCAGAA
AGTGGCTTTTGATCGAGTAGAACCTTTGTTGAAAATGTTCCGTCTGGACCAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCGAGTCTTTTTATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTGCAGACTTGATTCAGCTTTTGGAAGTGGAAAAGCAAAAGGGCAAGTCCATTCTCAT
GAGTACCCACGTGCTGGATTCAGCGGAGAAGATGTGTGATGCCTTTGTCATTCTCCATAAGGGTGAGGTGCGTGCCAAGG
GTAATCTCCTGCAACTGCGCGAAGCCTTTGATATGCCTGAGGCTAGTTTAAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGAGCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9HLZ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.614

99.177

0.72
  pptA Streptococcus thermophilus LMD-9

71.784

99.177

0.712