Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JJL46_RS09760 Genome accession   NZ_CP067432
Coordinates   2073132..2074481 (+) Length   449 a.a.
NCBI ID   WP_201135303.1    Uniprot ID   -
Organism   Chryseobacterium indoltheticum strain POL15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2068132..2079481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJL46_RS09745 (JJL46_09745) yidC 2068241..2070064 (-) 1824 WP_115622087.1 membrane protein insertase YidC -
  JJL46_RS09750 (JJL46_09750) - 2070243..2071850 (-) 1608 WP_201135302.1 CTP synthase -
  JJL46_RS09755 (JJL46_09755) - 2072057..2072623 (-) 567 WP_076558000.1 YceI family protein -
  JJL46_RS09760 (JJL46_09760) radA 2073132..2074481 (+) 1350 WP_201135303.1 DNA repair protein RadA Machinery gene
  JJL46_RS09765 (JJL46_09765) - 2074596..2075267 (+) 672 WP_201135304.1 class I SAM-dependent methyltransferase -
  JJL46_RS09770 (JJL46_09770) - 2075264..2075971 (+) 708 WP_201135305.1 VanW family protein -
  JJL46_RS09775 (JJL46_09775) - 2075968..2076561 (+) 594 WP_201135306.1 ACP phosphodiesterase -
  JJL46_RS09780 (JJL46_09780) - 2076568..2077089 (-) 522 WP_201135307.1 DUF6702 family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49808.46 Da        Isoelectric Point: 6.5078

>NTDB_id=526072 JJL46_RS09760 WP_201135303.1 2073132..2074481(+) (radA) [Chryseobacterium indoltheticum strain POL15]
MAKLKTAYFCQNCGSQYPQWTGQCKNCLEWNTLVEEIVEKTSSKTPPFSKSKQNVINIIEVEAVEEPRIKTPSDELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKIFYVSGEESASQIKMRADRLADVKNPNCFLYTETSLEKILHEAKKL
EPDFVIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENNVPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTAEIGIYEMVSQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
CTGFDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVVASILSSNEDIAISEHFCFAGEIGLSGEIRPI
AQVEQRITEAEKLGYEKIFVSNLNKIPKRKFGIKIEEVSKVEDFHERLF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=526072 JJL46_RS09760 WP_201135303.1 2073132..2074481(+) (radA) [Chryseobacterium indoltheticum strain POL15]
ATGGCAAAACTTAAAACTGCATACTTCTGTCAAAACTGCGGATCGCAATACCCTCAATGGACCGGGCAATGTAAAAATTG
TCTCGAATGGAACACATTAGTAGAAGAAATTGTTGAAAAAACGTCTTCAAAAACACCGCCTTTTTCAAAATCAAAGCAAA
ACGTAATCAACATCATTGAAGTTGAAGCCGTTGAAGAGCCGAGAATAAAAACACCTTCCGATGAGCTGAACCGTGTCTTG
GGAGGCGGAATTGTCTTAGGATCTGTTACCTTAATCGGTGGTGAGCCCGGAATTGGTAAGTCTACTCTGCTTTTGCAACT
TGCTTTAAAAATGAAGAAGAAAATCTTCTACGTTTCAGGAGAAGAAAGTGCTTCGCAGATCAAAATGAGAGCCGACCGTT
TGGCAGATGTAAAAAACCCGAACTGTTTTCTGTATACCGAAACGTCTTTAGAAAAAATACTTCATGAAGCTAAAAAACTG
GAACCGGATTTCGTTATTATCGATTCTATTCAAACATTACAATCACAGTTGATCGAAAGTTCGCCCGGAACTGTTTCCCA
AATCAGAGAATGTTCAAATGAAATTATTAAATATGCCAAAGAAAACAACGTTCCCGTATTTTTGGTAGGGCACATCACAA
AAGATGGACAAATTGCCGGACCAAAGGTTTTGGAGCACATGGTGGATGTCGTTCTGAATTTCGATGGTGATAGAAACCAT
CTTTTCAGACTTTTGAGAGCCAATAAAAATCGTTTCGGATCAACTGCAGAGATCGGAATTTACGAAATGGTTTCGCAAGG
ATTAAAAGAAATTAAAAACCCTTCTGAAATTTTAATTACTAAAAAGTTTGAAGAGCTTTCGGGCAATTCTGTAGCAGTAA
CTTTAGAAGGAAACCGACCGATGCTGTTGGAAATTCAGGCTTTGGTGAGCACTGCAGTCTATGGAACGCCACAGAGAAGT
TGTACCGGTTTTGATTCTAAAAGACTTAATATGTTGTTAGCTGTTCTTGAAAAAAGAGCAGGTTTTCAATTGGGTGCAAA
AGATGTCTTTTTAAATATCACAGGTGGAATAAAAACCGACGATCCTGCTTTAGATTTAGCGGTTGTCGCATCTATTCTGT
CATCAAATGAAGATATTGCTATTTCTGAACATTTCTGTTTTGCTGGTGAAATTGGTTTGAGCGGAGAAATTCGTCCGATT
GCACAGGTCGAACAAAGAATTACGGAGGCTGAAAAATTGGGTTATGAGAAAATTTTTGTTTCTAATTTAAATAAAATTCC
AAAGAGAAAATTCGGAATTAAGATTGAAGAAGTAAGTAAAGTTGAGGATTTTCATGAACGATTGTTTTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(61-217)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(338-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.673

100

0.49
  radA Streptococcus pneumoniae Rx1

47.198

100

0.488
  radA Streptococcus pneumoniae D39

47.198

100

0.488
  radA Streptococcus pneumoniae R6

47.198

100

0.488
  radA Streptococcus pneumoniae TIGR4

47.198

100

0.488
  radA Streptococcus mitis NCTC 12261

47.198

100

0.488
  radA Streptococcus mitis SK321

49.188

95.991

0.472