Detailed information NTG0526048

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: K6129_RS15430
• Genome accession: NZ_CP082097
• Coordinates: 3055264..3056256 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MS15052
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3050264..3061256

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6129_RS15410 (K6129_15330)	ygbM	3050895..3051671 (+)	777	WP_001136908.1	HPr family phosphocarrier protein	-
K6129_RS15415 (K6129_15335)	ygbN	3051760..3053124 (+)	1365	WP_000104443.1	GntP family transporter	-
K6129_RS15420 (K6129_15340)	-	3053267..3054310 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
K6129_RS15425 (K6129_15345)	-	3054535..3055086 (+)	552	WP_001179442.1	flavodoxin family protein	-
K6129_RS15430 (K6129_15350)	rpoS	3055264..3056256 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
K6129_RS15435 (K6129_15355)	nlpD	3056319..3057413 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
K6129_RS15440 (K6129_15360)	pcm	3057598..3058224 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
K6129_RS15445 (K6129_15365)	surE	3058218..3058979 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
K6129_RS15450 (K6129_15370)	truD	3058960..3060009 (-)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
K6129_RS15455 (K6129_15375)	ispF	3060006..3060485 (-)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
K6129_RS15460 (K6129_15380)	ispD	3060485..3061195 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=526048 K6129_RS15430 WP_000081550.1 3055264..3056256(-) (rpoS) [Escherichia coli strain MS15052]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=526048 K6129_RS15430 WP_000081550.1 3055264..3056256(-) (rpoS) [Escherichia coli strain MS15052]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715