Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   K6135_RS22055 Genome accession   NZ_CP082094
Coordinates   4605302..4606066 (-) Length   254 a.a.
NCBI ID   WP_001136232.1    Uniprot ID   Q0TBX9
Organism   Escherichia coli strain MS15236     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 4600302..4611066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6135_RS22040 (K6135_21865) yhhJ 4602959..4604083 (+) 1125 WP_001297994.1 ABC transporter permease -
  K6135_RS22045 (K6135_21870) nikR 4604092..4604493 (-) 402 WP_001190060.1 nickel-responsive transcriptional regulator NikR -
  K6135_RS22050 (K6135_21875) nikE 4604499..4605305 (-) 807 WP_000173679.1 nickel import ATP-binding protein NikE -
  K6135_RS22055 (K6135_21880) amiE 4605302..4606066 (-) 765 WP_001136232.1 nickel import ATP-binding protein NikD Regulator
  K6135_RS22060 (K6135_21885) nikC 4606066..4606899 (-) 834 WP_001008959.1 nickel ABC transporter permease subunit NikC -
  K6135_RS22065 (K6135_21890) nikB 4606896..4607840 (-) 945 WP_000947070.1 nickel ABC transporter permease subunit NikB -
  K6135_RS22070 (K6135_21895) nikA 4607840..4609414 (-) 1575 WP_000493122.1 nickel ABC transporter substrate-binding protein -
  K6135_RS22075 (K6135_21900) acpT 4609525..4610112 (-) 588 WP_000285789.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26812.40 Da        Isoelectric Point: 6.6882

>NTDB_id=526002 K6135_RS22055 WP_001136232.1 4605302..4606066(-) (amiE) [Escherichia coli strain MS15236]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=526002 K6135_RS22055 WP_001136232.1 4605302..4606066(-) (amiE) [Escherichia coli strain MS15236]
ATGCCACAACAGATTGAACTCCGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGAAGTGGCAGCGGGAAGTCGCTGACCTGCGCCGCGACGCTGGGCATTCTGC
CTGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTGGCCGATGGAAAACCGGTTTCTCCCTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGTGCCTTTAATCCGCTGCACACCATGCACACCCACGCGCGTGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTCTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGCGAATCACCG
TTTATCATCGCCGATGAACCAACCACCGATCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTTACCCATGATATGGGCGTGGTAGCGCGTCTGGCAGACGATGTGGCGGTAA
TGTCTCACGGTAAGATTGTTGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0TBX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398