Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JJN09_RS22155 Genome accession   NZ_CP067412
Coordinates   4893233..4894600 (-) Length   455 a.a.
NCBI ID   WP_039771749.1    Uniprot ID   A0A2N8E079
Organism   Pseudomonas sp. HS6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4888233..4899600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJN09_RS22130 (JJN09_22100) - 4888458..4889168 (+) 711 WP_249483758.1 GntR family transcriptional regulator -
  JJN09_RS22135 (JJN09_22105) yjiA 4889291..4890265 (-) 975 WP_249483759.1 GTPase -
  JJN09_RS22140 (JJN09_22110) - 4890425..4890622 (-) 198 WP_003228401.1 YbdD/YjiX family protein -
  JJN09_RS22145 (JJN09_22115) - 4890638..4892704 (-) 2067 WP_096820844.1 carbon starvation CstA family protein -
  JJN09_RS22150 (JJN09_22120) - 4892864..4893232 (+) 369 WP_249483760.1 PilZ domain-containing protein -
  JJN09_RS22155 (JJN09_22125) radA 4893233..4894600 (-) 1368 WP_039771749.1 DNA repair protein RadA Machinery gene
  JJN09_RS22160 (JJN09_22130) - 4894646..4895191 (-) 546 WP_192559045.1 ankyrin repeat domain-containing protein -
  JJN09_RS22165 (JJN09_22135) katB 4895243..4896784 (-) 1542 WP_249483761.1 catalase KatB -
  JJN09_RS22170 (JJN09_22140) mscL 4897069..4897482 (+) 414 WP_102354481.1 large-conductance mechanosensitive channel protein MscL -
  JJN09_RS22175 (JJN09_22145) - 4897516..4898292 (-) 777 WP_249483762.1 ferredoxin--NADP reductase -
  JJN09_RS22180 (JJN09_22150) - 4898638..4899351 (+) 714 WP_249483763.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48729.20 Da        Isoelectric Point: 6.8987

>NTDB_id=525947 JJN09_RS22155 WP_039771749.1 4893233..4894600(-) (radA) [Pseudomonas sp. HS6]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIKTLAEVSIEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKTMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDSLFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=525947 JJN09_RS22155 WP_039771749.1 4893233..4894600(-) (radA) [Pseudomonas sp. HS6]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAATGCGGCGCAACCTTTCCCAAGTGGGCCGGGCAGTGCGGCGAATG
CGGCGCGTGGAACACCCTGACTGAAACCATGGTCGAGAGCGGCGGCGCCGCCGCCCCGAGCGGGCGCACCGGCTGGGCCG
GGCAACAGGCCCAGATCAAGACCCTGGCTGAGGTCAGCATCGAAGAGATTCCGCGTTTTTCCACCGCCTCCGGCGAGCTG
GATCGAGTGCTTGGCGGTGGTCTGGTCGACGGCTCGGTGGTGTTGATCGGCGGCGATCCGGGTATCGGCAAGTCGACGAT
TCTATTGCAGACCCTGTGCAACCTCGCCAAAACCATGCCGGCGCTGTACGTCACCGGTGAGGAATCCCAGCAACAAGTGG
CGATGCGCGCACGCCGACTTGGGCTGCCGCAGGATCAATTGCGGGTGATGACCGAAACCTGCATCGAAACCATCATCGCC
ACCGCCCGCCAGGAAAAACCCAAGGTGATGGTGATCGACTCGATCCAGACGATCTTCACCGAACAACTGCAATCGGCGCC
GGGCGGCGTGTCTCAGGTGCGCGAAAGTGCGGCGTTGCTGGTGCGTTACGCCAAACAAAGCGGCACGGCGATTTTCCTGG
TCGGCCACGTGACCAAAGAAGGGGCATTGGCCGGCCCGCGTGTTCTGGAGCACATGGTCGACACCGTGCTGTATTTCGAA
GGCGAGTCCGATGGTCGGTTGCGTCTGCTGCGGGCGGTGAAAAACCGTTTCGGTGCGGTCAACGAACTGGGCGTATTCGG
CATGACCGACAAGGGACTGAAAGAAGTCTCCAACCCTTCGGCGATTTTTCTCACGCGCGCTCAGGAAGAAGTCCCGGGCA
GTGTGGTGATGGCAACGTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGTCATCTGGCC
AACCCGCGTCGTGTCACGCTGGGTCTGGATCAGAATCGTCTGGCGATGCTGTTGGCGGTGTTGCACCGTCATGGTGGCAT
TCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTCGGCGGAGTGAAAGTGCTGGAAACTGCGTCCGACCTGGCGCTGA
TGGCCGCCGTCATGTCGAGCCTGCGCAACAGGCCGTTGCCCCATGATTTGCTGGTGTTCGGTGAGGTCGGTCTGTCTGGT
GAGGTGCGCCCGGTGCCAAGCGGTCAGGAGCGGTTGAAGGAAGCCGCCAAACACGGCTTCAAGCGCGCGATCGTGCCCAA
GGGCAACGCGCCGAAGGAAGCGCCTCCAGGCTTGCAGATCATTGCGGTGACGCGTCTGGAGCAGGCGCTGGATTCACTCT
TCGAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(81-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N8E079

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.492
  radA Streptococcus pneumoniae Rx1

46.304

100

0.468
  radA Streptococcus pneumoniae R6

46.304

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.304

100

0.468
  radA Streptococcus pneumoniae D39

46.304

100

0.468
  radA Streptococcus mitis SK321

46.491

100

0.466
  radA Streptococcus mitis NCTC 12261

46.272

100

0.464