Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   K6132_RS21490 Genome accession   NZ_CP082091
Coordinates   4361697..4362692 (+) Length   331 a.a.
NCBI ID   WP_302347307.1    Uniprot ID   -
Organism   Escherichia coli strain MS20645     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4356697..4367692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6132_RS21465 (K6132_21260) rbsC 4357324..4357542 (+) 219 Protein_4221 ribose ABC transporter permease -
  K6132_RS21470 (K6132_21265) - 4357570..4358917 (-) 1348 Protein_4222 IS3-like element IS1397 family transposase -
  K6132_RS21475 (K6132_21270) rbsC 4358971..4359723 (+) 753 Protein_4223 ribose ABC transporter permease -
  K6132_RS21480 (K6132_21275) rbsB 4359748..4360638 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  K6132_RS21485 (K6132_21280) rbsK 4360764..4361693 (+) 930 WP_001361791.1 ribokinase -
  K6132_RS21490 (K6132_21285) cytR 4361697..4362692 (+) 996 WP_302347307.1 ribose operon transcriptional repressor RbsR Regulator
  K6132_RS21495 (K6132_21290) mdtD 4362658..4364085 (-) 1428 WP_001280850.1 multidrug transporter subunit MdtD -
  K6132_RS21500 (K6132_21295) yieP 4364108..4364800 (-) 693 WP_001131161.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 331 a.a.        Molecular weight: 36743.10 Da        Isoelectric Point: 5.2141

>NTDB_id=525902 K6132_RS21490 WP_302347307.1 4361697..4362692(+) (cytR) [Escherichia coli strain MS20645]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLMIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRP
QAVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQ
LTPILMERGSA

Nucleotide


Download         Length: 996 bp        

>NTDB_id=525902 K6132_RS21490 WP_302347307.1 4361697..4362692(+) (cytR) [Escherichia coli strain MS20645]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACAGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGTAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATGATCGATAAAGGTCATACCCGTATTGCCTGTATTACCGGTCC
GCTGGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATG
GCTATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGTTATCACATCCGCTGCGTCCT
CAGGCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCA
GGATATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACAACTATACACCAACCGA
AAGATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTACAGCAACAACGATTACAA
CTTACTCCGATTCTGATGGAACGTGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(173-330)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.937

100

0.372
  cytR Vibrio cholerae C6706

38.961

93.051

0.363