Detailed information NTG0525880

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: K6132_RS15755
• Genome accession: NZ_CP082091
• Coordinates: 3178285..3179277 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MS20645
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3173285..3184277

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6132_RS15735 (K6132_15590)	ygbM	3173916..3174692 (+)	777	WP_001539449.1	HPr family phosphocarrier protein	-
K6132_RS15740 (K6132_15595)	ygbN	3174781..3176145 (+)	1365	WP_000104433.1	GntP family transporter	-
K6132_RS15745 (K6132_15600)	-	3176288..3177331 (-)	1044	WP_001609261.1	MBL fold metallo-hydrolase	-
K6132_RS15750 (K6132_15605)	-	3177556..3178107 (+)	552	WP_001179442.1	flavodoxin family protein	-
K6132_RS15755 (K6132_15610)	rpoS	3178285..3179277 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
K6132_RS15760 (K6132_15615)	nlpD	3179340..3180434 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
K6132_RS15765 (K6132_15620)	pcm	3180619..3181245 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
K6132_RS15770 (K6132_15625)	surE	3181239..3182000 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
K6132_RS15775 (K6132_15630)	truD	3181981..3183030 (-)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
K6132_RS15780 (K6132_15635)	ispF	3183027..3183506 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
K6132_RS15785 (K6132_15640)	ispD	3183506..3184216 (-)	711	WP_001539454.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=525880 K6132_RS15755 WP_000081550.1 3178285..3179277(-) (rpoS) [Escherichia coli strain MS20645]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=525880 K6132_RS15755 WP_000081550.1 3178285..3179277(-) (rpoS) [Escherichia coli strain MS20645]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715