Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   K6132_RS11910 Genome accession   NZ_CP082091
Coordinates   2385254..2386681 (+) Length   475 a.a.
NCBI ID   WP_072258000.1    Uniprot ID   -
Organism   Escherichia coli strain MS20645     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2380254..2391681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6132_RS11870 (K6132_11765) yeeW 2380439..2380633 (+) 195 WP_000988601.1 DUF5983 family protein -
  K6132_RS11875 (K6132_11770) - 2380679..2380759 (+) 81 Protein_2336 hypothetical protein -
  K6132_RS11880 (K6132_11775) - 2381048..2381155 (-) 108 WP_074147515.1 transposase domain-containing protein -
  K6132_RS26040 - 2381107..2381430 (+) 324 WP_352057403.1 EutP/PduV family microcompartment system protein -
  K6132_RS11890 (K6132_11785) tmaR 2381530..2381859 (-) 330 WP_000450409.1 DUF496 family protein -
  K6132_RS11895 (K6132_11790) yeeA 2382031..2383089 (-) 1059 WP_001200890.1 FUSC family protein -
  K6132_RS11900 (K6132_11795) sbmC 2383287..2383760 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  K6132_RS11905 (K6132_11800) dacD 2383879..2385045 (-) 1167 WP_033548239.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  K6132_RS11910 (K6132_11805) sbcB 2385254..2386681 (+) 1428 WP_072258000.1 exodeoxyribonuclease I Machinery gene
  K6132_RS11915 (K6132_11810) plaP 2386755..2388113 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  K6132_RS11920 (K6132_11815) yoeI 2388103..2388165 (-) 63 WP_010723108.1 membrane protein YoeI -
  K6132_RS11925 (K6132_11820) yeeY 2388380..2389309 (-) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  K6132_RS11930 (K6132_11825) yeeZ 2389355..2390179 (-) 825 WP_000754737.1 SDR family oxidoreductase -
  K6132_RS11935 (K6132_11830) yoeB 2390262..2390516 (-) 255 WP_000767822.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  K6132_RS11940 (K6132_11835) yefM 2390513..2390764 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  K6132_RS11945 (K6132_11840) hisL 2391047..2391097 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54511.84 Da        Isoelectric Point: 5.4720

>NTDB_id=525867 K6132_RS11910 WP_072258000.1 2385254..2386681(+) (sbcB) [Escherichia coli strain MS20645]
MMNDGKQQSTFLFHDYETFGTHPALDRPVQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTTWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=525867 K6132_RS11910 WP_072258000.1 2385254..2386681(+) (sbcB) [Escherichia coli strain MS20645]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGTACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCACCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGAGAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581