Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   PA1R_RS04070 Genome accession   NC_022806
Coordinates   908781..909137 (-) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa PA1R     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 903781..914137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA1R_RS04045 (PA1R_gp0788) - 904164..904796 (-) 633 WP_003091112.1 DUF4823 domain-containing protein -
  PA1R_RS04050 (PA1R_gp0789) - 904861..905757 (-) 897 WP_023517787.1 radical SAM protein -
  PA1R_RS04055 (PA1R_gp0790) - 905907..906545 (-) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  PA1R_RS04060 (PA1R_gp0791) - 906631..907764 (+) 1134 WP_003118082.1 aminotransferase class V-fold PLP-dependent enzyme -
  PA1R_RS04065 (PA1R_gp0792) - 907990..908766 (-) 777 WP_003091117.1 TatD family hydrolase -
  PA1R_RS04070 (PA1R_gp0793) pilZ 908781..909137 (-) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  PA1R_RS04075 (PA1R_gp0794) - 909171..910157 (-) 987 WP_003104126.1 DNA polymerase III subunit delta' -
  PA1R_RS04080 (PA1R_gp0795) tmk 910150..910782 (-) 633 WP_023517788.1 dTMP kinase -
  PA1R_RS04085 (PA1R_gp0796) mltG 910811..911860 (-) 1050 WP_003104128.1 endolytic transglycosylase MltG -
  PA1R_RS04090 (PA1R_gp0797) pabC 911866..912681 (-) 816 WP_003110198.1 aminodeoxychorismate lyase -
  PA1R_RS04095 (PA1R_gp0798) fabF 912681..913925 (-) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=52585 PA1R_RS04070 WP_003091119.1 908781..909137(-) (pilZ) [Pseudomonas aeruginosa PA1R]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=52585 PA1R_RS04070 WP_003091119.1 908781..909137(-) (pilZ) [Pseudomonas aeruginosa PA1R]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAAGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449