Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JHT90_RS15125 Genome accession   NZ_CP067393
Coordinates   3223904..3225265 (+) Length   453 a.a.
NCBI ID   WP_201092522.1    Uniprot ID   -
Organism   Entomomonas asaccharolytica strain F2A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3218904..3230265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHT90_RS15100 (JHT90_15100) - 3219195..3220226 (-) 1032 WP_236253990.1 polyamine ABC transporter substrate-binding protein -
  JHT90_RS15105 (JHT90_15105) - 3220275..3221309 (-) 1035 WP_201092516.1 ABC transporter substrate-binding protein -
  JHT90_RS15110 (JHT90_15110) - 3221340..3222425 (-) 1086 WP_201092518.1 ABC transporter ATP-binding protein -
  JHT90_RS15115 (JHT90_15115) - 3222608..3223354 (+) 747 WP_201092520.1 SDR family NAD(P)-dependent oxidoreductase -
  JHT90_RS15120 (JHT90_15120) mscL 3223385..3223795 (-) 411 WP_236253992.1 large-conductance mechanosensitive channel protein MscL -
  JHT90_RS15125 (JHT90_15125) radA 3223904..3225265 (+) 1362 WP_201092522.1 DNA repair protein RadA Machinery gene
  JHT90_RS15130 (JHT90_15130) - 3225267..3226460 (-) 1194 WP_201092523.1 MFS transporter -
  JHT90_RS15135 (JHT90_15135) - 3226658..3228877 (+) 2220 WP_201092525.1 hypothetical protein -
  JHT90_RS15140 (JHT90_15140) - 3228847..3229569 (+) 723 WP_201092527.1 DUF3142 domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48803.02 Da        Isoelectric Point: 7.0108

>NTDB_id=525836 JHT90_RS15125 WP_201092522.1 3223904..3225265(+) (radA) [Entomomonas asaccharolytica strain F2A]
MAKAKRLYGCTECGATFAKWSGQCAECGAWNTLVETVVDNSPMASTNRSWTGQAAQVKTLAEVSTEETPRFTTHSSELDR
VLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIANHYPALYVTGEESQQQVAMRARRLGLPEDKLRVMTETSIEAIISTA
KQEHPKVMVIDSIQTIFTEQLQSAPGGVAQVRESAALLTRYAKQNNTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEGE
SDGRLRLLRAVKNRFGAVNELGVFAMTDKGLREISNPSAIFLSRTQEAVPGSVVMATWEGSRPMLVEVQALVDTSHLGNP
RRVTLGLDQNRLAMLLAVLHRHGGVPTYDQDVFINVVGGVKVLETAADLALLATVISSLRNRPLAHDLLVFGEVGLSGEI
RPVPSGQERLKEAAKHGFKRAIVPKANAPKTAPEGLTIIAVTRLEQALEALFE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=525836 JHT90_RS15125 WP_201092522.1 3223904..3225265(+) (radA) [Entomomonas asaccharolytica strain F2A]
ATGGCTAAAGCTAAACGTTTATATGGCTGTACTGAGTGTGGTGCGACTTTTGCTAAATGGTCTGGCCAATGTGCAGAATG
TGGCGCATGGAATACGCTTGTAGAAACAGTGGTTGATAATTCCCCAATGGCAAGTACCAACCGTAGTTGGACAGGCCAAG
CGGCACAGGTAAAAACCTTAGCGGAAGTAAGCACTGAAGAAACGCCTCGTTTTACTACCCATTCTTCTGAGCTTGATCGC
GTATTAGGTGGTGGTTTAGTAGATGGTTCTGTGGTATTAATTGGTGGTGATCCTGGCATTGGTAAATCAACCATTTTATT
ACAAACTCTCTGTAATATAGCCAACCATTACCCTGCCCTTTACGTAACAGGTGAAGAATCACAACAACAAGTGGCCATGC
GGGCTCGTCGTTTAGGTTTGCCAGAGGATAAACTTCGGGTGATGACTGAAACCTCTATTGAAGCCATTATTAGTACCGCT
AAACAAGAACACCCTAAAGTAATGGTGATCGATTCCATTCAAACCATTTTTACTGAACAACTACAATCAGCACCTGGTGG
CGTTGCTCAAGTTAGAGAAAGTGCTGCTTTATTAACACGCTATGCCAAACAAAATAACACCGCTATTTTCTTAGTCGGCC
ATGTGACTAAAGAGGGGGCATTAGCAGGCCCTCGTGTACTAGAGCATATGGTTGATACTGTACTTTATTTTGAAGGTGAA
TCAGATGGTCGATTACGGTTATTACGGGCGGTAAAAAATCGTTTTGGCGCTGTTAATGAATTGGGTGTTTTTGCTATGAC
AGATAAAGGATTAAGAGAAATCTCTAATCCTTCTGCTATTTTCCTAAGCCGCACGCAAGAAGCTGTACCTGGCAGTGTTG
TAATGGCAACATGGGAAGGCTCTCGCCCTATGTTAGTGGAAGTACAGGCTTTAGTGGATACTAGTCATTTAGGTAATCCA
CGCCGTGTTACCTTAGGTTTAGATCAAAATCGTTTAGCTATGTTATTAGCCGTATTGCACCGTCATGGAGGCGTACCTAC
CTATGACCAAGATGTGTTTATTAATGTGGTTGGCGGTGTAAAAGTGCTTGAAACCGCTGCTGATTTAGCATTACTTGCTA
CAGTAATTTCCAGCTTACGCAACAGACCTCTAGCCCATGATCTATTGGTGTTTGGTGAAGTAGGTTTATCAGGGGAAATT
CGTCCTGTACCTAGTGGTCAAGAACGTTTAAAAGAAGCAGCTAAACATGGCTTTAAACGTGCCATCGTGCCGAAAGCTAA
TGCACCTAAAACAGCACCTGAAGGTTTAACTATAATTGCTGTTACCCGCTTAGAGCAGGCTTTAGAAGCATTATTTGAAT
AG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(348-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.352

100

0.486
  radA Streptococcus mitis NCTC 12261

45.695

100

0.457
  radA Streptococcus pneumoniae Rx1

45.695

100

0.457
  radA Streptococcus pneumoniae D39

45.695

100

0.457
  radA Streptococcus pneumoniae R6

45.695

100

0.457
  radA Streptococcus pneumoniae TIGR4

45.695

100

0.457
  radA Streptococcus mitis SK321

45.695

100

0.457