Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   K6126_RS19675 Genome accession   NZ_CP082087
Coordinates   4055839..4056831 (+) Length   330 a.a.
NCBI ID   WP_000224461.1    Uniprot ID   -
Organism   Escherichia coli strain MS20649     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4050839..4061831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6126_RS19650 (K6126_19505) rbsD 4050963..4051382 (+) 420 WP_001364631.1 D-ribose pyranase -
  K6126_RS19655 (K6126_19510) rbsA 4051390..4052895 (+) 1506 WP_000387756.1 ribose ABC transporter ATP-binding protein RbsA -
  K6126_RS19660 (K6126_19515) rbsC 4052900..4053865 (+) 966 WP_302410295.1 ribose ABC transporter permease -
  K6126_RS19665 (K6126_19520) rbsB 4053890..4054780 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  K6126_RS19670 (K6126_19525) rbsK 4054906..4055835 (+) 930 WP_001300603.1 ribokinase -
  K6126_RS19675 (K6126_19530) cytR 4055839..4056831 (+) 993 WP_000224461.1 ribose operon transcriptional repressor RbsR Regulator
  K6126_RS19680 (K6126_19535) mdtD 4056797..4058224 (-) 1428 WP_001280887.1 multidrug transporter subunit MdtD -
  K6126_RS19685 (K6126_19540) yieP 4058247..4058939 (-) 693 WP_001131169.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36541.85 Da        Isoelectric Point: 5.0626

>NTDB_id=525823 K6126_RS19675 WP_000224461.1 4055839..4056831(+) (cytR) [Escherichia coli strain MS20649]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPALLRLEGYRAAMKRAGLSIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=525823 K6126_RS19675 WP_000224461.1 4055839..4056831(+) (cytR) [Escherichia coli strain MS20649]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCTCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAGCATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.349

100

0.376
  cytR Vibrio cholerae C6706

39.088

93.03

0.364