Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   K6133_RS11195 Genome accession   NZ_CP082083
Coordinates   2261954..2263381 (+) Length   475 a.a.
NCBI ID   WP_021522136.1    Uniprot ID   -
Organism   Escherichia coli strain MS20654     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2256954..2268381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6133_RS11155 (K6133_11100) yeeW 2257139..2257327 (+) 189 Protein_2193 DUF5983 family protein -
  K6133_RS11160 (K6133_11105) - 2257379..2257459 (+) 81 Protein_2194 hypothetical protein -
  K6133_RS11165 (K6133_11110) - 2257748..2257894 (-) 147 Protein_2195 transposase domain-containing protein -
  K6133_RS11170 (K6133_11115) - 2257948..2258130 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  K6133_RS11175 (K6133_11120) tmaR 2258231..2258560 (-) 330 WP_000450409.1 DUF496 family protein -
  K6133_RS11180 (K6133_11125) yeeA 2258732..2259790 (-) 1059 WP_001200890.1 FUSC family protein -
  K6133_RS11185 (K6133_11130) sbmC 2259988..2260461 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  K6133_RS11190 (K6133_11135) dacD 2260579..2261745 (-) 1167 WP_001297905.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  K6133_RS11195 (K6133_11140) sbcB 2261954..2263381 (+) 1428 WP_021522136.1 exodeoxyribonuclease I Machinery gene
  K6133_RS11200 (K6133_11145) plaP 2263455..2264813 (-) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  K6133_RS11205 (K6133_11150) yoeI 2264803..2264865 (-) 63 WP_010723108.1 membrane protein YoeI -
  K6133_RS11210 (K6133_11155) yeeY 2265079..2266008 (-) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  K6133_RS11215 (K6133_11160) yeeZ 2266054..2266878 (-) 825 WP_000754737.1 SDR family oxidoreductase -
  K6133_RS11220 (K6133_11165) yoeB 2266961..2267215 (-) 255 WP_000767822.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  K6133_RS11225 (K6133_11170) yefM 2267212..2267463 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  K6133_RS11230 (K6133_11175) hisL 2267746..2267796 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54456.76 Da        Isoelectric Point: 5.4720

>NTDB_id=525617 K6133_RS11195 WP_021522136.1 2261954..2263381(+) (sbcB) [Escherichia coli strain MS20654]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTTWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=525617 K6133_RS11195 WP_021522136.1 2261954..2263381(+) (sbcB) [Escherichia coli strain MS20654]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCACCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGAGAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581