Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   JHE06_RS03765 Genome accession   NZ_CP067364
Coordinates   786812..788632 (+) Length   606 a.a.
NCBI ID   WP_201089531.1    Uniprot ID   -
Organism   Carnobacterium sp. CS13     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 781812..793632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHE06_RS03745 (JHE06_03745) - 782559..783500 (+) 942 WP_058918080.1 ATP-binding cassette domain-containing protein -
  JHE06_RS03750 (JHE06_03750) spxA 783856..784254 (+) 399 WP_058918081.1 transcriptional regulator SpxA -
  JHE06_RS03755 (JHE06_03755) - 784570..785235 (+) 666 WP_058918082.1 adaptor protein MecA -
  JHE06_RS03760 (JHE06_03760) - 785358..786557 (+) 1200 WP_201089529.1 competence protein CoiA family protein -
  JHE06_RS03765 (JHE06_03765) pepF 786812..788632 (+) 1821 WP_201089531.1 oligoendopeptidase F Regulator
  JHE06_RS03770 (JHE06_03770) - 788751..789437 (-) 687 WP_058918086.1 DsbA family protein -
  JHE06_RS03775 (JHE06_03775) - 789593..790189 (-) 597 WP_058918087.1 CYTH domain-containing protein -
  JHE06_RS03780 (JHE06_03780) - 790390..791052 (+) 663 WP_058918088.1 GTP pyrophosphokinase family protein -
  JHE06_RS03785 (JHE06_03785) - 791089..791901 (+) 813 WP_058918089.1 NAD kinase -
  JHE06_RS03790 (JHE06_03790) - 791891..792802 (+) 912 WP_058918090.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 69287.51 Da        Isoelectric Point: 4.6234

>NTDB_id=525617 JHE06_RS03765 WP_201089531.1 786812..788632(+) (pepF) [Carnobacterium sp. CS13]
MEESKKLPKREEVPVALTWDLNVIFESDEAFHAAYQELEQKIAGIAAFKGRLTESAETFLHCIQYILEISNELETLYVYA
HLKNDQDTANAVYQGMYDRASSLATKAGEAISWFEPEVLEIPEEKLSGYLKENKDLVMYQHYIDQLTASRKHILSANEEA
LLAGAGEIFGASSRTFNVLNNADLQFPVIKDENGDDIQLSHGVYGQLMESMDRSVREAAFKNLYQVYQGLNNTFASTLSS
HVKYHNYNAKVHHYQSAREKALAANHIPETVYDTLLEVVDDNLPLLHRYVALRKELLNVDELHMYDMYTPITGEAGIKFT
YEDAKETTMEALKPLGEEYLAVLEKAFQERWIDVVENAGKRSGAYSSGAYETNPYILLNWHDSLNHLYTLVHELGHSAHS
YFTRANQPYVYGDYSIFLAEIASTTNENILTEYLLETQKDPQVRAYILNHYLDGFKGTIFRQTQFAEFEHFIHEETAKGT
PLTSDFLNQAYGKLNARYYGPAVEEDSEIAFEWSRIPHFYYNYYVYQYATGFSAATALAAKILKDEEGTSLENYLTYLKS
GSSDYPIEVMKKAGVDMTEKNYIQEAMTVFETRLNELETLIETLKA

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=525617 JHE06_RS03765 WP_201089531.1 786812..788632(+) (pepF) [Carnobacterium sp. CS13]
ATGGAAGAATCAAAAAAATTACCAAAACGTGAAGAAGTCCCCGTAGCATTGACTTGGGATTTAAATGTTATTTTTGAGTC
TGATGAAGCGTTTCATGCAGCCTATCAAGAATTGGAACAAAAGATAGCTGGAATAGCTGCATTTAAAGGGAGATTAACAG
AAAGTGCTGAAACGTTCTTGCACTGTATTCAATATATTCTTGAAATTTCCAACGAGCTGGAAACGTTGTATGTTTACGCT
CACTTAAAAAATGATCAAGATACAGCCAACGCCGTATATCAAGGAATGTACGACCGCGCTTCTTCACTAGCAACTAAAGC
AGGAGAAGCAATTTCTTGGTTTGAACCTGAAGTATTAGAAATCCCAGAAGAAAAATTGTCTGGTTATTTAAAAGAAAACA
AAGATTTAGTTATGTATCAACATTACATTGATCAATTGACAGCTTCTAGAAAACACATTCTGTCAGCTAATGAGGAAGCT
CTCTTGGCAGGAGCAGGAGAAATTTTTGGAGCTTCAAGCCGGACCTTTAATGTTTTGAATAATGCTGACTTACAGTTTCC
AGTAATCAAAGATGAGAACGGCGACGATATCCAATTATCGCACGGAGTCTATGGACAACTGATGGAAAGTATGGATCGTT
CTGTACGTGAAGCTGCTTTTAAAAATTTATACCAAGTCTATCAGGGGTTGAACAATACCTTCGCTAGTACCTTGTCTTCG
CATGTTAAATACCATAATTACAATGCAAAAGTGCATCATTACCAATCTGCACGTGAGAAAGCATTGGCAGCAAACCATAT
TCCTGAAACAGTATACGATACGTTATTAGAGGTTGTCGATGATAATCTGCCGCTGCTTCATCGTTATGTAGCTTTAAGAA
AAGAACTATTAAACGTTGACGAATTGCATATGTACGATATGTATACGCCTATTACTGGAGAAGCAGGCATCAAGTTCACT
TATGAAGACGCTAAAGAAACAACAATGGAAGCCTTAAAACCACTAGGAGAAGAATACCTAGCTGTGTTAGAGAAAGCTTT
TCAAGAGCGTTGGATCGATGTTGTAGAGAATGCAGGCAAGCGTAGCGGTGCATACTCTTCAGGAGCTTATGAAACCAATC
CCTATATTTTACTAAACTGGCACGATTCATTAAATCATTTATATACGTTAGTTCATGAACTGGGACATAGCGCGCATAGC
TATTTTACTAGAGCAAACCAACCATATGTCTACGGAGATTATTCTATTTTCTTAGCTGAAATTGCTTCGACAACTAACGA
AAATATCTTGACCGAATATTTATTAGAGACTCAAAAAGACCCTCAAGTGCGTGCTTATATCTTAAATCATTATTTAGATG
GTTTTAAAGGAACTATTTTCCGGCAAACACAATTTGCTGAATTTGAGCATTTTATTCATGAAGAAACAGCAAAAGGCACA
CCTTTAACCAGTGATTTTTTAAATCAAGCTTATGGAAAATTGAATGCACGCTACTATGGTCCAGCAGTTGAAGAAGATTC
TGAAATTGCATTTGAATGGTCGCGTATTCCTCATTTTTATTACAATTATTATGTTTACCAATATGCAACAGGGTTTTCAG
CAGCAACAGCGTTAGCAGCCAAAATCTTAAAAGATGAAGAAGGTACATCATTAGAGAACTACCTGACTTATTTGAAATCA
GGCAGTAGTGATTATCCGATTGAAGTCATGAAAAAAGCAGGAGTAGATATGACAGAAAAAAACTATATTCAAGAAGCGAT
GACTGTTTTTGAAACTAGGTTAAATGAGTTGGAGACGTTGATTGAAACGTTGAAGGCTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-588)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.701

96.535

0.528