Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   JHE06_RS03325 Genome accession   NZ_CP067364
Coordinates   680049..681761 (+) Length   570 a.a.
NCBI ID   WP_201089476.1    Uniprot ID   -
Organism   Carnobacterium sp. CS13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 675049..686761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHE06_RS03295 (JHE06_03295) folD 675188..676033 (+) 846 WP_058920325.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  JHE06_RS03300 (JHE06_03300) xseA 676061..677401 (+) 1341 WP_201089472.1 exodeoxyribonuclease VII large subunit -
  JHE06_RS03305 (JHE06_03305) - 677398..677634 (+) 237 WP_058920114.1 exodeoxyribonuclease VII small subunit -
  JHE06_RS03310 (JHE06_03310) - 677652..678551 (+) 900 WP_058920115.1 farnesyl diphosphate synthase -
  JHE06_RS03315 (JHE06_03315) - 678570..679397 (+) 828 WP_201089474.1 TlyA family RNA methyltransferase -
  JHE06_RS03320 (JHE06_03320) argR 679562..680011 (+) 450 WP_058920117.1 transcriptional regulator ArgR -
  JHE06_RS03325 (JHE06_03325) recN 680049..681761 (+) 1713 WP_201089476.1 DNA repair protein RecN Machinery gene
  JHE06_RS03335 (JHE06_03335) - 682207..683163 (-) 957 WP_058920119.1 magnesium transporter CorA family protein -
  JHE06_RS03340 (JHE06_03340) - 683328..684452 (+) 1125 WP_058920120.1 M20/M25/M40 family metallo-hydrolase -
  JHE06_RS03345 (JHE06_03345) gndA 684567..686000 (+) 1434 WP_058920121.1 NADP-dependent phosphogluconate dehydrogenase -

Sequence

Protein


Download         Length: 570 a.a.        Molecular weight: 64347.36 Da        Isoelectric Point: 4.8911

>NTDB_id=525610 JHE06_RS03325 WP_201089476.1 680049..681761(+) (recN) [Carnobacterium sp. CS13]
MLQELTIKNFAIIHDLNLSFESGMTVLTGETGAGKSIIIDAVGLLAGGRGSNEFIRHGESKCVLEGLFSIEDNQLTYELL
NSYDIEMEDGTLIIQRDIHRNGKNVCRINGRLVNIATLRLIGETIIDIHGQNEHQELMNPERHLAMLDQFGDKELHRLKA
AYGTTYAAYKEVKKAYDKWQNSEQELAQRLDMLQFQVNDIEMAELGDHEEEELLEEKNLLMNYQKITAALSGSYDALQGE
ENSGIDLIGQAMSEMSSIEDIDGTYKLLSETIANSYFQLQEAASDILREMDQMAYDENRLNDIEKRLELIHQMKRKYGDS
IAEIKSYYEKIAVELLQIQNREDHINHLIKELNTLSEKVIQQGKALTKKRQSVAKQLEAAIHEQLKELFMEKVVFEVQFF
NGKAEPTLETAREIGLDHVEFYIATNLGEPLKSLAKVASGGELSRMMLALKTIFSKSQGITSIIFDEVDTGVSGRVAQAI
ANKIYMVAIHSQVLCITHLPQVAAMADHHLFISKTIVAERTETHVEALAEPQKVEEVARMLAGTEITKLTLEHAKELREL
AKNQKTKQLN

Nucleotide


Download         Length: 1713 bp        

>NTDB_id=525610 JHE06_RS03325 WP_201089476.1 680049..681761(+) (recN) [Carnobacterium sp. CS13]
TTGTTACAAGAATTAACCATTAAAAACTTTGCCATCATTCATGATTTGAATCTAAGTTTTGAATCGGGTATGACAGTTTT
AACAGGGGAAACCGGAGCAGGGAAATCCATTATTATTGATGCAGTCGGCTTATTGGCTGGTGGACGCGGTTCAAATGAAT
TCATTCGTCATGGTGAGAGCAAATGTGTCTTGGAAGGGTTGTTTTCAATTGAAGACAATCAACTGACTTATGAGTTGCTA
AATTCTTATGATATTGAAATGGAAGATGGCACCCTTATTATTCAACGAGATATTCATCGCAATGGTAAAAATGTCTGCCG
CATCAATGGACGCCTGGTGAATATTGCGACTTTACGTTTAATAGGAGAAACGATCATTGATATTCATGGTCAAAACGAGC
ACCAAGAGCTAATGAACCCTGAGCGGCACTTGGCAATGTTAGATCAATTTGGAGATAAAGAGCTGCACCGGCTTAAAGCC
GCTTACGGAACAACTTATGCTGCTTACAAAGAAGTTAAAAAAGCCTATGATAAATGGCAAAATAGTGAACAGGAATTGGC
GCAACGTTTGGATATGCTGCAGTTTCAAGTGAATGATATTGAAATGGCTGAGCTAGGCGATCATGAGGAAGAAGAGTTGT
TGGAAGAAAAAAATCTATTAATGAATTACCAAAAGATCACAGCGGCTTTATCAGGCAGTTATGATGCTTTACAGGGTGAA
GAAAACAGCGGGATCGATCTGATTGGTCAAGCTATGTCCGAAATGAGTTCAATTGAAGACATTGATGGTACGTACAAACT
TTTATCAGAAACGATTGCAAATAGTTACTTTCAGTTGCAAGAAGCAGCAAGCGACATCTTAAGAGAAATGGATCAAATGG
CTTATGATGAAAATCGGTTAAATGATATTGAAAAACGGTTGGAATTGATTCACCAAATGAAGCGTAAATATGGAGATTCT
ATTGCAGAGATCAAATCTTATTATGAAAAAATTGCCGTAGAACTGCTTCAAATCCAAAACCGAGAAGATCACATTAATCA
TTTGATCAAAGAACTGAATACTCTTTCGGAAAAGGTGATTCAGCAAGGCAAAGCCTTGACGAAAAAGCGACAAAGCGTTG
CAAAACAATTAGAAGCGGCCATTCATGAACAACTAAAAGAATTATTCATGGAAAAAGTTGTTTTTGAGGTACAATTTTTT
AATGGAAAAGCGGAACCAACGTTAGAAACCGCCCGAGAAATAGGATTAGATCATGTAGAATTTTATATCGCGACTAATTT
AGGAGAACCTTTAAAATCACTAGCTAAAGTGGCCTCTGGGGGAGAATTATCCAGAATGATGTTAGCGTTGAAAACTATTT
TTTCAAAGTCACAAGGCATTACCAGTATCATTTTTGATGAAGTCGATACGGGTGTCAGCGGGCGTGTGGCACAAGCGATT
GCAAACAAAATTTATATGGTTGCGATTCATTCGCAAGTTTTATGTATTACCCATTTGCCGCAAGTAGCGGCGATGGCGGA
TCATCATTTATTTATATCAAAAACAATAGTAGCTGAACGGACAGAAACACATGTTGAAGCATTGGCAGAACCTCAAAAAG
TAGAAGAAGTTGCCAGAATGTTGGCTGGAACTGAAATTACAAAGCTAACGCTAGAACATGCAAAAGAACTGCGCGAATTA
GCGAAAAATCAAAAAACAAAACAATTAAACTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.396

100

0.502