Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JJC02_RS00445 Genome accession   NZ_CP067346
Coordinates   53701..55074 (+) Length   457 a.a.
NCBI ID   WP_227450251.1    Uniprot ID   -
Organism   Clostridioides sp. ES-S-0054-01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 48701..60074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJC02_RS00425 (JJC02_00425) - 49081..49545 (+) 465 WP_227858772.1 CtsR family transcriptional regulator -
  JJC02_RS00430 (JJC02_00430) - 49552..50046 (+) 495 WP_227858774.1 UvrB/UvrC motif-containing protein -
  JJC02_RS00435 (JJC02_00435) - 50062..51087 (+) 1026 WP_236124768.1 protein arginine kinase -
  JJC02_RS00440 (JJC02_00440) - 51074..53521 (+) 2448 WP_227858776.1 ATP-dependent Clp protease ATP-binding subunit -
  JJC02_RS00445 (JJC02_00445) radA 53701..55074 (+) 1374 WP_227450251.1 DNA repair protein RadA Machinery gene
  JJC02_RS00450 (JJC02_00450) disA 55077..56147 (+) 1071 WP_227858777.1 DNA integrity scanning diadenylate cyclase DisA -
  JJC02_RS00455 (JJC02_00455) - 56236..57324 (+) 1089 WP_227858779.1 PIN/TRAM domain-containing protein -
  JJC02_RS00460 (JJC02_00460) - 57453..59630 (+) 2178 WP_227858780.1 hypothetical protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50246.04 Da        Isoelectric Point: 7.5943

>NTDB_id=525548 JJC02_RS00445 WP_227450251.1 53701..55074(+) (radA) [Clostridioides sp. ES-S-0054-01]
MAKIKTKYVCQSCGYETAKWLGKCPECTKWNTFVEEVDQKSTKKEVFIIDKSSSKPVSINSIESKEEERFTTDINELDRV
LGGGIVKGSLVLVGGDPGIGKSTLLIQVSSNVANLGKTVLYITGEESESQIKMRAKRLGINSENLYIFAENNLSIIESYL
ESVNPELIILDSIQTVFSPEISSAPGTVSQIKEGTSKFMKISKKMGISTFIVGHVTKEGSLAGPKLLEHMVDTVLYFEGE
RYNTYRLVRAVKNRFGSTNELGVFEMRDLGLVELDNPSKILISEKPKDVAGSVIISTVEGTRPMLLELQALVSPTSFGIP
KRTSTGVDYNRVGMLLAVLEKRVGLQIQNQDVYINIVGGIKINEPSIDLGIAISVASSFRNIPIDEDIAVTGEVGLTGEV
RAVSFIEKRIAECKKLGFKKIVIPRSNYEVVKDTKGIEIWPADNLRQAINIVLGRNQ

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=525548 JJC02_RS00445 WP_227450251.1 53701..55074(+) (radA) [Clostridioides sp. ES-S-0054-01]
ATGGCAAAAATAAAAACAAAATATGTATGTCAATCTTGTGGATATGAAACAGCTAAATGGCTTGGTAAATGTCCGGAATG
TACAAAATGGAATACATTTGTAGAAGAAGTAGACCAAAAAAGCACCAAAAAAGAGGTCTTTATAATAGATAAATCCTCAT
CTAAACCAGTTAGTATAAATTCAATAGAAAGTAAAGAAGAAGAGAGGTTTACAACAGATATAAATGAATTAGATAGAGTA
CTTGGAGGAGGTATAGTTAAAGGCTCTTTAGTACTTGTTGGTGGAGACCCTGGTATAGGTAAATCAACGCTTTTAATCCA
AGTATCTAGTAATGTTGCTAATTTAGGAAAAACTGTTTTATATATAACTGGAGAAGAATCAGAATCTCAAATAAAAATGA
GAGCTAAAAGATTAGGTATTAACTCAGAAAATTTATATATATTTGCTGAAAATAATTTAAGTATAATTGAATCTTATTTA
GAAAGCGTAAATCCAGAATTAATAATTCTAGACTCAATTCAAACTGTCTTTAGTCCAGAAATATCCTCGGCACCAGGAAC
TGTCAGCCAAATTAAAGAAGGTACTTCAAAATTCATGAAAATTTCTAAAAAAATGGGAATTTCAACATTTATAGTTGGGC
ATGTTACAAAAGAAGGTTCACTAGCAGGACCAAAATTATTAGAGCATATGGTTGATACTGTTCTATATTTTGAAGGAGAA
AGATATAATACTTATAGATTAGTAAGGGCTGTTAAAAATAGATTTGGCTCAACTAATGAACTTGGAGTATTTGAAATGAG
AGATTTGGGATTAGTAGAACTTGATAATCCATCTAAAATTTTAATATCTGAAAAACCAAAAGATGTAGCAGGTTCAGTAA
TAATATCTACGGTAGAAGGTACGAGACCGATGTTACTTGAATTACAAGCATTAGTTTCACCTACAAGTTTTGGTATACCA
AAAAGAACATCTACAGGTGTAGATTACAATAGAGTAGGTATGTTGCTAGCAGTATTAGAAAAACGTGTTGGTTTGCAAAT
ACAAAATCAAGATGTCTATATAAACATAGTTGGAGGAATAAAGATAAATGAACCTTCAATTGACTTGGGGATAGCTATTT
CTGTAGCATCTAGTTTTAGAAATATACCAATAGATGAAGATATAGCTGTTACAGGAGAAGTGGGGCTTACAGGAGAAGTT
AGAGCAGTAAGCTTTATAGAAAAGAGAATTGCTGAGTGTAAGAAGCTTGGATTTAAAAAAATAGTAATTCCTAGAAGTAA
TTATGAAGTTGTAAAAGATACTAAAGGCATAGAAATATGGCCGGCAGATAACTTAAGACAAGCTATAAATATAGTACTTG
GGAGGAATCAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(66-219)

Subunit ChlI of Mg-chelatase (ChlI)

(342-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

56.893

100

0.569
  radA Streptococcus mitis NCTC 12261

50.881

99.344

0.505
  radA Streptococcus pneumoniae Rx1

50.881

99.344

0.505
  radA Streptococcus pneumoniae D39

50.881

99.344

0.505
  radA Streptococcus pneumoniae R6

50.881

99.344

0.505
  radA Streptococcus pneumoniae TIGR4

50.881

99.344

0.505
  radA Streptococcus mitis SK321

53.396

93.435

0.499