Detailed information NTG0525546

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: K6137_RS14490
• Genome accession: NZ_CP082080
• Coordinates: 2942442..2943434 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MS20655
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2937442..2948434

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6137_RS14470 (K6137_14385)	ygbM	2938073..2938849 (+)	777	WP_001136908.1	HPr family phosphocarrier protein	-
K6137_RS14475 (K6137_14390)	ygbN	2938938..2940302 (+)	1365	WP_000104443.1	GntP family transporter	-
K6137_RS14480 (K6137_14395)	-	2940445..2941488 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
K6137_RS14485 (K6137_14400)	-	2941713..2942264 (+)	552	WP_001179442.1	flavodoxin family protein	-
K6137_RS14490 (K6137_14405)	rpoS	2942442..2943434 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
K6137_RS14495 (K6137_14410)	nlpD	2943497..2944591 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
K6137_RS14500 (K6137_14415)	pcm	2944776..2945402 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
K6137_RS14505 (K6137_14420)	surE	2945396..2946157 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
K6137_RS14510 (K6137_14425)	truD	2946138..2947187 (-)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
K6137_RS14515 (K6137_14430)	ispF	2947184..2947663 (-)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
K6137_RS14520 (K6137_14435)	ispD	2947663..2948373 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=525546 K6137_RS14490 WP_000081550.1 2942442..2943434(-) (rpoS) [Escherichia coli strain MS20655]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=525546 K6137_RS14490 WP_000081550.1 2942442..2943434(-) (rpoS) [Escherichia coli strain MS20655]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715