Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   K6137_RS10565 Genome accession   NZ_CP082080
Coordinates   2136650..2138077 (+) Length   475 a.a.
NCBI ID   WP_000980604.1    Uniprot ID   -
Organism   Escherichia coli strain MS20655     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2131650..2143077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6137_RS10525 (K6137_10455) yeeW 2131835..2132029 (+) 195 WP_000988601.1 DUF5983 family protein -
  K6137_RS10530 (K6137_10460) - 2132075..2132155 (+) 81 Protein_2078 hypothetical protein -
  K6137_RS10535 (K6137_10465) - 2132444..2132590 (-) 147 Protein_2079 transposase domain-containing protein -
  K6137_RS10540 (K6137_10470) - 2132644..2132826 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  K6137_RS10545 (K6137_10475) tmaR 2132927..2133256 (-) 330 WP_000450409.1 DUF496 family protein -
  K6137_RS10550 (K6137_10480) yeeA 2133428..2134486 (-) 1059 WP_001200890.1 FUSC family protein -
  K6137_RS10555 (K6137_10485) sbmC 2134684..2135157 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  K6137_RS10560 (K6137_10490) dacD 2135276..2136441 (-) 1166 Protein_2084 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  K6137_RS10565 (K6137_10495) sbcB 2136650..2138077 (+) 1428 WP_000980604.1 exodeoxyribonuclease I Machinery gene
  K6137_RS10570 (K6137_10500) plaP 2138151..2139509 (-) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  K6137_RS10575 (K6137_10505) yoeI 2139499..2139561 (-) 63 WP_010723108.1 membrane protein YoeI -
  K6137_RS10580 (K6137_10510) yeeY 2139776..2140705 (-) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  K6137_RS10585 (K6137_10515) yeeZ 2140751..2141575 (-) 825 WP_000754733.1 SDR family oxidoreductase -
  K6137_RS10590 (K6137_10520) yoeB 2141658..2141912 (-) 255 WP_000767822.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  K6137_RS10595 (K6137_10525) yefM 2141909..2142160 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  K6137_RS10600 (K6137_10530) hisL 2142443..2142493 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54442.73 Da        Isoelectric Point: 5.4720

>NTDB_id=525533 K6137_RS10565 WP_000980604.1 2136650..2138077(+) (sbcB) [Escherichia coli strain MS20655]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=525533 K6137_RS10565 WP_000980604.1 2136650..2138077(+) (sbcB) [Escherichia coli strain MS20655]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGAGAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583