Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   T15_RS08745 Genome accession   NC_022665
Coordinates   1730843..1731892 (-) Length   349 a.a.
NCBI ID   WP_014736227.1    Uniprot ID   -
Organism   Streptococcus suis T15     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1725843..1736892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  T15_RS08725 (T15_1740) trpB 1726459..1727634 (-) 1176 WP_023371232.1 tryptophan synthase subunit beta -
  T15_RS08730 (T15_1741) - 1728369..1728896 (-) 528 WP_023371234.1 VanZ family protein -
  T15_RS08735 (T15_1742) rlmN 1728893..1730005 (-) 1113 WP_023371236.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  T15_RS08740 (T15_1743) - 1730014..1730655 (-) 642 WP_023371238.1 YutD family protein -
  T15_RS08745 (T15_1744) sepM 1730843..1731892 (-) 1050 WP_014736227.1 SepM family pheromone-processing serine protease Regulator
  T15_RS08750 (T15_1745) coaD 1731879..1732367 (-) 489 WP_023371241.1 pantetheine-phosphate adenylyltransferase -
  T15_RS08755 (T15_1746) rsmD 1732357..1732896 (-) 540 WP_014638485.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  T15_RS08760 (T15_1747) - 1733204..1733926 (-) 723 WP_023371243.1 hypothetical protein -
  T15_RS08765 (T15_1748) - 1733983..1734369 (-) 387 WP_004194735.1 rhodanese-like domain-containing protein -
  T15_RS08770 (T15_1749) - 1734369..1734587 (-) 219 WP_024405570.1 YqgQ family protein -
  T15_RS08775 (T15_1750) - 1734895..1735497 (-) 603 WP_023371247.1 response regulator -
  T15_RS08780 (T15_1751) - 1735494..1736588 (-) 1095 WP_023371249.1 sensor histidine kinase -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 37775.85 Da        Isoelectric Point: 4.6112

>NTDB_id=52553 T15_RS08745 WP_014736227.1 1730843..1731892(-) (sepM) [Streptococcus suis T15]
MKKNRKLTLIASIVLGTLLIWFAVFVRLPYYLESPGGAADIRQVLTVNNQIDQEDGSYNFTYVSVQQATALQLFAAQFDP
YTTVRSSEEMTGGADNEEYFRIARFYMETSQNMAKYQGLTLAGKEVNLDFFGVYVLALTDDSTFKKVLNIADTVVSINGK
TFESSPDLIKYVSGLELGSDVTVGYISAGQEKSADGKIIKLSNGKNGIGITLVDHTEVQSSIPIDFQTGDIGGPSAGLMF
TLAIYTQLAEPDLRDGRIIAGTGTIEQDGKVGDIGGADKKVISAAKSGASIFFVPNNPVDVEVLKKNPKAKTNYEEAKEA
AEKAGLDIEVVPVKTVQEAIDYLKKTKGE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=52553 T15_RS08745 WP_014736227.1 1730843..1731892(-) (sepM) [Streptococcus suis T15]
ATGAAGAAAAATAGGAAGTTAACCTTAATTGCATCTATTGTTTTAGGAACTCTTTTGATTTGGTTTGCCGTTTTTGTTCG
TCTGCCTTATTATTTGGAAAGTCCAGGTGGAGCTGCCGATATTCGTCAGGTACTAACGGTGAACAATCAAATAGACCAAG
AGGATGGCTCTTACAACTTCACCTATGTATCAGTCCAACAAGCTACAGCTTTACAACTATTCGCTGCTCAGTTTGATCCC
TATACGACAGTTCGTTCCTCTGAAGAGATGACAGGAGGGGCCGACAATGAGGAGTATTTCCGTATAGCACGGTTTTACAT
GGAAACTTCGCAAAATATGGCGAAGTATCAAGGATTGACCTTGGCAGGAAAAGAAGTCAATCTTGATTTCTTTGGTGTCT
ATGTGCTTGCCTTGACGGATGATTCAACCTTTAAAAAAGTTCTTAATATTGCCGACACTGTTGTGAGTATCAATGGAAAA
ACATTTGAGTCTTCTCCTGATTTGATTAAATATGTGAGTGGCTTGGAACTTGGAAGTGATGTGACAGTTGGTTATATTAG
CGCTGGTCAGGAAAAATCTGCGGACGGTAAGATTATCAAATTGTCTAATGGCAAAAACGGGATAGGTATCACTCTCGTAG
ATCATACAGAGGTTCAAAGTTCGATTCCGATTGATTTCCAAACAGGAGATATTGGTGGTCCAAGTGCTGGTCTGATGTTT
ACACTTGCCATCTATACTCAACTCGCAGAGCCTGACTTACGTGATGGTCGGATTATTGCTGGTACGGGGACTATCGAGCA
GGATGGAAAAGTAGGTGACATTGGTGGGGCTGATAAGAAGGTCATTTCGGCAGCTAAGTCTGGTGCAAGTATCTTTTTTG
TACCAAACAATCCAGTTGATGTAGAAGTTTTGAAGAAAAATCCAAAGGCTAAAACGAACTATGAAGAAGCTAAGGAAGCA
GCCGAGAAAGCAGGTCTAGATATTGAGGTAGTTCCTGTGAAAACTGTTCAAGAGGCTATTGATTATTTGAAGAAAACAAA
GGGCGAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

61.095

99.427

0.607


Multiple sequence alignment