Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JJC01_RS00660 Genome accession   NZ_CP067345
Coordinates   101603..102976 (-) Length   457 a.a.
NCBI ID   WP_227437108.1    Uniprot ID   -
Organism   Clostridioides sp. ES-S-0010-02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 96603..107976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJC01_RS00645 (JJC01_00645) - 97041..99218 (-) 2178 WP_227825402.1 hypothetical protein -
  JJC01_RS00650 (JJC01_00650) - 99347..100441 (-) 1095 WP_227437104.1 PIN/TRAM domain-containing protein -
  JJC01_RS00655 (JJC01_00655) disA 100530..101600 (-) 1071 WP_227437106.1 DNA integrity scanning diadenylate cyclase DisA -
  JJC01_RS00660 (JJC01_00660) radA 101603..102976 (-) 1374 WP_227437108.1 DNA repair protein RadA Machinery gene
  JJC01_RS00665 (JJC01_00665) - 103156..105603 (-) 2448 WP_227834979.1 ATP-dependent Clp protease ATP-binding subunit -
  JJC01_RS00670 (JJC01_00670) - 105590..106615 (-) 1026 WP_227834980.1 protein arginine kinase -
  JJC01_RS00675 (JJC01_00675) - 106631..107125 (-) 495 WP_227437113.1 UvrB/UvrC motif-containing protein -
  JJC01_RS00680 (JJC01_00680) - 107132..107596 (-) 465 WP_227437114.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50264.10 Da        Isoelectric Point: 8.2849

>NTDB_id=525529 JJC01_RS00660 WP_227437108.1 101603..102976(-) (radA) [Clostridioides sp. ES-S-0010-02]
MAKIKTKYVCQSCGYETAKWLGKCPECTKWNTFVEEVDQKSTKKEVFIIDKSSSKPVSITSIESKEEERFTTDIKELDRV
LGGGIVKGSLVLVGGDPGIGKSTLLIQVSSNVANLGKTVLYITGEESESQIKMRAKRLGINSENLYIFAENNLSIIESYL
ESVNPQLIILDSIQTVFSPEISSAPGTVSQIKEGTSKFMKISKKMGISTFIVGHVTKEGSLAGPKLLEHMVDTVLYFEGE
RYNTYRLVRAVKNRFGSTNELGVFEMRDLGLVELDNPSKILISEKPKDVAGSVIISTVEGTRPMLLELQALVSPTSFGIA
RRTSTGVDYNRVGMLLAVLEKRVGLQIQNQDVYINIVGGIKINEPSIDLGIAISVASSFRNIPIDEDIAVTGEVGLTGEV
RSVSFIEKRIAECKKLGFKKIVVPRSNYDVVKDTKGIEIWPVDNLRQAINIVLGRNQ

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=525529 JJC01_RS00660 WP_227437108.1 101603..102976(-) (radA) [Clostridioides sp. ES-S-0010-02]
ATGGCAAAAATAAAAACTAAATATGTATGTCAATCTTGTGGATATGAAACAGCTAAGTGGCTTGGAAAATGTCCAGAGTG
TACAAAATGGAATACATTTGTAGAAGAAGTAGATCAAAAAAGCACAAAAAAAGAGGTCTTTATAATAGATAAATCTTCAT
CTAAACCAGTTAGTATAACTTCAATAGAGAGTAAAGAAGAAGAAAGGTTTACAACAGACATAAAAGAATTAGATAGAGTT
CTTGGTGGAGGGATAGTTAAAGGTTCTCTAGTACTTGTTGGTGGAGACCCTGGTATAGGTAAATCCACACTTTTAATTCA
AGTCTCTAGTAATGTAGCTAATTTAGGAAAGACTGTTTTATATATAACTGGAGAAGAATCAGAATCACAGATAAAAATGA
GAGCAAAAAGATTAGGTATTAATTCAGAAAATTTATATATATTTGCTGAAAATAATTTGAGTATAATTGAATCTTATTTA
GAAAGTGTAAATCCACAATTAATAATTCTAGACTCAATTCAAACTGTCTTTAGTCCAGAAATATCTTCAGCACCAGGCAC
TGTCAGCCAAATTAAAGAAGGTACTTCAAAATTCATGAAGATTTCTAAAAAAATGGGAATTTCAACATTCATAGTTGGTC
ATGTAACCAAAGAAGGTTCACTAGCAGGTCCAAAATTATTAGAGCATATGGTTGATACTGTTTTATATTTTGAAGGTGAA
AGATATAATACATATAGATTAGTAAGGGCTGTTAAAAATAGATTTGGTTCAACAAATGAGCTTGGAGTATTTGAAATGAG
GGACTTGGGATTAGTAGAGCTTGATAACCCATCTAAGATTTTGATATCTGAAAAACCAAAAGATGTAGCAGGTTCAGTCA
TAATATCCACTGTAGAAGGTACAAGACCAATGCTACTTGAATTACAAGCATTAGTTTCACCAACAAGTTTTGGTATAGCA
AGAAGAACATCTACAGGAGTAGATTATAATAGAGTTGGTATGTTATTAGCAGTCTTAGAAAAACGTGTTGGTCTGCAAAT
ACAAAACCAAGATGTATATATAAATATAGTTGGAGGTATAAAGATAAATGAACCTTCGATTGACTTAGGAATAGCTATTT
CTGTAGCATCTAGCTTTAGAAATATACCTATAGATGAAGATATAGCTGTTACAGGAGAGGTAGGACTTACAGGAGAAGTT
AGATCAGTAAGTTTTATAGAAAAAAGAATTGCTGAGTGCAAAAAACTTGGCTTTAAAAAGATAGTAGTTCCTAGAAGTAA
TTATGATGTTGTAAAAGATACTAAAGGTATAGAAATATGGCCAGTAGACAACTTAAGACAAGCTATAAATATAGTACTTG
GGAGGAATCAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(65-219)

Subunit ChlI of Mg-chelatase (ChlI)

(342-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

57.33

100

0.573
  radA Streptococcus mitis NCTC 12261

51.322

99.344

0.51
  radA Streptococcus pneumoniae Rx1

51.322

99.344

0.51
  radA Streptococcus pneumoniae D39

51.322

99.344

0.51
  radA Streptococcus pneumoniae R6

51.322

99.344

0.51
  radA Streptococcus pneumoniae TIGR4

51.322

99.344

0.51
  radA Streptococcus mitis SK321

51.101

99.344

0.508