Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FJQ98_RS25765 Genome accession   NZ_CP067341
Coordinates   5138817..5140193 (-) Length   458 a.a.
NCBI ID   WP_201406582.1    Uniprot ID   -
Organism   Lysinibacillus agricola strain FJAT-51161     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5133817..5145193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJQ98_RS25745 (FJQ98_25745) ispF 5134064..5134540 (-) 477 WP_053596034.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  FJQ98_RS25750 (FJQ98_25750) - 5134814..5136472 (+) 1659 WP_053596033.1 SWIM zinc finger family protein -
  FJQ98_RS25755 (FJQ98_25755) ispD 5136642..5137331 (-) 690 WP_053596032.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  FJQ98_RS25760 (FJQ98_25760) - 5137344..5138429 (-) 1086 WP_053596031.1 PIN/TRAM domain-containing protein -
  FJQ98_RS25765 (FJQ98_25765) radA 5138817..5140193 (-) 1377 WP_201406582.1 DNA repair protein RadA Machinery gene
  FJQ98_RS25770 (FJQ98_25770) - 5140361..5142805 (-) 2445 WP_201406583.1 ATP-dependent Clp protease ATP-binding subunit -
  FJQ98_RS25775 (FJQ98_25775) - 5142795..5143904 (-) 1110 WP_053596028.1 protein arginine kinase -
  FJQ98_RS25780 (FJQ98_25780) - 5143901..5144449 (-) 549 WP_053596027.1 UvrB/UvrC motif-containing protein -
  FJQ98_RS25785 (FJQ98_25785) - 5144464..5144934 (-) 471 WP_053596026.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50302.19 Da        Isoelectric Point: 7.6633

>NTDB_id=525501 FJQ98_RS25765 WP_201406582.1 5138817..5140193(-) (radA) [Lysinibacillus agricola strain FJAT-51161]
MAKKKTKFVCSGCGYESAKWMGRCPGCGEWNKMVEEVEVIAKGPRGAFQHSATVTQKALPIMQIEAAEESRVATEMGELN
RVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSALLSNKGHRVLYISGEESIRQTKLRAERFRVISQELYIYSETNLEFLNQ
TIDEVQPKFVIVDSIQTVFHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFE
GERHHNHRILRSQKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSQGAAGSTIVASMEGTRPILVEIQSLVTPTSFN
YPKRMATGVDQNRVQLLMAVLEKRMGLMLQAQDAYIKVAGGVKLDEPAIDLAVLTSIVSSFKDQAVRATDCFIGEVGLTG
EVRRVSRIEQRVIEAAKLGFKRVFLPASNIGGWDFPQGIEIVGVETIKDALNACFREL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=525501 FJQ98_RS25765 WP_201406582.1 5138817..5140193(-) (radA) [Lysinibacillus agricola strain FJAT-51161]
TTGGCAAAGAAGAAAACGAAATTTGTATGCTCAGGCTGTGGCTATGAATCTGCAAAATGGATGGGAAGATGCCCAGGATG
CGGAGAATGGAATAAGATGGTTGAAGAGGTAGAGGTCATTGCAAAAGGGCCACGAGGGGCATTCCAACATTCTGCTACAG
TTACCCAAAAGGCTCTCCCTATTATGCAGATTGAAGCTGCTGAGGAATCACGAGTTGCAACAGAAATGGGTGAGCTCAAC
CGAGTGCTAGGTGGAGGCATCGTGCCAGGTTCTCTTGTATTAATCGGAGGAGATCCTGGGATCGGGAAGTCGACGTTATT
ATTACAAGTATCTGCGTTGCTGTCGAATAAGGGACATCGTGTGCTCTATATTTCCGGTGAGGAATCCATCCGTCAAACAA
AGCTGCGTGCAGAACGTTTTAGGGTGATCTCACAGGAGCTTTATATATATTCTGAAACGAATTTAGAGTTTTTAAATCAA
ACCATTGATGAGGTGCAGCCAAAGTTTGTTATTGTCGATTCTATTCAAACTGTTTTTCATCCAGAGGTAACGAGTGCACC
TGGTAGTGTATCACAAGTGCGTGAATGTACAGCAGAACTCATGCGAATTGCAAAAACAAAGGGAATTGCTATTTTTCTAG
TTGGACATGTAACAAAAGAAGGACAAATTGCAGGGCCACGTATTTTAGAGCACATGGTTGATACGGTATTGTATTTTGAA
GGAGAACGACATCATAATCACCGTATTTTACGGAGCCAAAAAAACCGCTTCGGCTCTACAAATGAAATTGCTATCTTTGA
AATGCTTCAAGGAGGCTTAAAGGAAGTGTTAAACCCGTCTGAGTTGTTCCTACAGGAGCGTTCACAGGGGGCGGCTGGGT
CAACAATCGTAGCCTCAATGGAAGGTACACGGCCAATTCTAGTTGAAATTCAGTCGCTTGTAACACCAACAAGCTTTAAT
TATCCGAAACGAATGGCAACAGGTGTCGATCAAAACCGTGTGCAACTGCTTATGGCCGTCCTTGAAAAGAGAATGGGTCT
CATGCTACAGGCACAGGATGCATATATTAAAGTTGCTGGCGGCGTGAAGCTTGATGAGCCTGCAATTGATTTGGCTGTGT
TAACAAGCATTGTTTCGAGCTTTAAGGATCAAGCTGTCAGAGCGACAGATTGCTTTATTGGGGAAGTAGGTTTGACAGGC
GAGGTGCGTCGTGTATCTCGGATTGAACAGCGTGTGATTGAGGCAGCAAAGCTCGGATTTAAACGGGTCTTCTTACCAGC
CTCTAATATCGGTGGCTGGGATTTTCCACAAGGTATTGAGATAGTTGGCGTAGAAACGATAAAGGATGCATTGAATGCTT
GCTTTAGAGAGCTATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(346-429)

AAA domain (AAA_25)

(64-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

70.485

99.127

0.699
  radA Streptococcus pneumoniae Rx1

61.842

99.563

0.616
  radA Streptococcus pneumoniae D39

61.842

99.563

0.616
  radA Streptococcus pneumoniae R6

61.842

99.563

0.616
  radA Streptococcus pneumoniae TIGR4

61.842

99.563

0.616
  radA Streptococcus mitis NCTC 12261

61.842

99.563

0.616
  radA Streptococcus mitis SK321

61.842

99.563

0.616