Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   FJQ98_RS24065 Genome accession   NZ_CP067341
Coordinates   4818032..4818982 (-) Length   316 a.a.
NCBI ID   WP_053593959.1    Uniprot ID   A0A0N0S2P6
Organism   Lysinibacillus agricola strain FJAT-51161     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4813032..4823982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJQ98_RS24035 (FJQ98_24035) - 4813717..4813995 (+) 279 WP_201406569.1 hypothetical protein -
  FJQ98_RS24040 (FJQ98_24040) - 4814371..4814598 (-) 228 WP_053593964.1 hypothetical protein -
  FJQ98_RS24045 (FJQ98_24045) - 4814937..4815251 (-) 315 WP_053593963.1 antibiotic biosynthesis monooxygenase -
  FJQ98_RS24050 (FJQ98_24050) - 4815253..4816263 (-) 1011 WP_053593962.1 siderophore ABC transporter substrate-binding protein -
  FJQ98_RS24055 (FJQ98_24055) - 4816328..4817089 (-) 762 WP_053593961.1 ABC transporter ATP-binding protein -
  FJQ98_RS24060 (FJQ98_24060) - 4817086..4818039 (-) 954 WP_053593960.1 iron chelate uptake ABC transporter family permease subunit -
  FJQ98_RS24065 (FJQ98_24065) ceuB 4818032..4818982 (-) 951 WP_053593959.1 ABC transporter permease Machinery gene
  FJQ98_RS24070 (FJQ98_24070) - 4819260..4820312 (-) 1053 WP_053593958.1 hypothetical protein -
  FJQ98_RS24075 (FJQ98_24075) - 4820349..4820594 (-) 246 WP_201406570.1 hypothetical protein -
  FJQ98_RS24080 (FJQ98_24080) menC 4820657..4821763 (-) 1107 WP_053593956.1 o-succinylbenzoate synthase -
  FJQ98_RS24085 (FJQ98_24085) - 4821786..4822610 (-) 825 WP_053593955.1 GNAT family N-acetyltransferase -
  FJQ98_RS24090 (FJQ98_24090) - 4822610..4823755 (-) 1146 WP_053593954.1 M20 peptidase aminoacylase family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34765.00 Da        Isoelectric Point: 10.1621

>NTDB_id=525500 FJQ98_RS24065 WP_053593959.1 4818032..4818982(-) (ceuB) [Lysinibacillus agricola strain FJAT-51161]
MKIRYLLTATVVLSIVSLFIGVVNIKPSDLLDFGSEETRLFFISRIPRLVAILLAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDATKLGVLISMMFFTNVTYFQKISFAFIFALAGTLLFMQILNRIKFKDAIFIPLIGLMFGNILSSITTFFAYKADII
QNISAWLQGDFSLMMKGRYELLYISVPVLIIAYIYANRFTVAGMGEDFAKNLGLSYKFVVNLGLVLVALISTTVVLTVGV
IPFLGLIIPNIISLFKGDNLAKTLPHTALLGMSFLLFCDIIGRVLIFPYEIPISMTVGVIGSAIFLFMLFRGKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=525500 FJQ98_RS24065 WP_053593959.1 4818032..4818982(-) (ceuB) [Lysinibacillus agricola strain FJAT-51161]
ATGAAAATAAGATATCTTTTAACAGCAACTGTAGTGTTGTCAATTGTGTCACTATTTATCGGTGTAGTGAATATTAAACC
TAGTGACCTTTTAGACTTCGGATCAGAAGAAACTAGACTATTCTTTATTAGTCGTATACCAAGACTTGTAGCAATTTTGT
TAGCAGGAGCAGGTATGAGTATTGCTGGTTTAATTATGCAAAGCTTAAGTAGGAATAAGTTCGTGTCACCAACGACAGCA
GGTACTTTAGATGCCACAAAGTTGGGTGTACTAATTTCGATGATGTTTTTCACAAATGTCACGTACTTTCAAAAAATTTC
CTTCGCTTTCATATTTGCTTTAGCCGGCACATTATTGTTTATGCAAATATTAAATCGAATAAAGTTTAAAGATGCGATCT
TTATACCGCTTATTGGCTTAATGTTTGGGAATATCCTTTCGTCGATTACAACGTTCTTTGCGTATAAGGCGGATATTATC
CAAAACATTTCTGCATGGTTACAAGGAGATTTCTCATTAATGATGAAAGGTCGATATGAGCTTTTATACATAAGTGTACC
CGTGCTGATTATAGCTTACATTTATGCAAATCGTTTCACAGTGGCTGGGATGGGTGAGGATTTTGCCAAAAACCTTGGTC
TTTCTTACAAATTCGTTGTGAATTTAGGTTTAGTGTTAGTAGCACTTATTTCAACGACAGTGGTGCTAACTGTTGGTGTG
ATTCCATTCCTTGGTTTAATCATTCCAAATATAATTTCGCTGTTCAAAGGGGATAACCTTGCTAAGACATTGCCTCATAC
AGCTTTACTAGGTATGTCGTTCTTATTATTCTGCGACATAATAGGGCGTGTGCTGATTTTCCCTTATGAAATTCCGATTA
GTATGACGGTCGGCGTCATCGGAAGTGCGATCTTCCTATTTATGTTGTTTAGGGGGAAAGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0N0S2P6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.797

100

0.538