Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   FJQ98_RS18035 Genome accession   NZ_CP067341
Coordinates   3625686..3627377 (-) Length   563 a.a.
NCBI ID   WP_053597075.1    Uniprot ID   -
Organism   Lysinibacillus agricola strain FJAT-51161     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3620686..3632377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJQ98_RS18005 (FJQ98_18005) - 3621095..3621256 (-) 162 WP_201406737.1 hypothetical protein -
  FJQ98_RS18010 (FJQ98_18010) - 3621502..3621990 (-) 489 WP_143115069.1 hypothetical protein -
  FJQ98_RS18015 (FJQ98_18015) - 3622606..3622947 (-) 342 WP_053597079.1 hypothetical protein -
  FJQ98_RS18020 (FJQ98_18020) - 3623084..3623320 (-) 237 WP_053597078.1 hypothetical protein -
  FJQ98_RS18025 (FJQ98_18025) spo0A 3623480..3624271 (-) 792 WP_053597077.1 sporulation transcription factor Spo0A -
  FJQ98_RS18030 (FJQ98_18030) - 3624617..3625564 (-) 948 WP_053597076.1 SpoIVB peptidase S55 domain-containing protein -
  FJQ98_RS18035 (FJQ98_18035) recN 3625686..3627377 (-) 1692 WP_053597075.1 DNA repair protein RecN Machinery gene
  FJQ98_RS18040 (FJQ98_18040) argR 3627412..3627861 (-) 450 WP_053597074.1 transcriptional regulator ArgR -
  FJQ98_RS18045 (FJQ98_18045) - 3627962..3628780 (-) 819 WP_053597073.1 TlyA family RNA methyltransferase -
  FJQ98_RS18050 (FJQ98_18050) dxs 3628780..3630681 (-) 1902 WP_053597072.1 1-deoxy-D-xylulose-5-phosphate synthase -
  FJQ98_RS18055 (FJQ98_18055) - 3630846..3631727 (-) 882 WP_053597071.1 polyprenyl synthetase family protein -
  FJQ98_RS18060 (FJQ98_18060) xseB 3631731..3631964 (-) 234 WP_053597070.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63351.95 Da        Isoelectric Point: 4.6478

>NTDB_id=525492 FJQ98_RS18035 WP_053597075.1 3625686..3627377(-) (recN) [Lysinibacillus agricola strain FJAT-51161]
MLRELSIRNFAIIEDLTVSFSDGLTVLTGETGAGKSIIIDAVHLLAGGRGNSEFIRHGTKKAELGGLFQISNSGHPVHKK
LEEAGIEIEEDTIILRRDLNDSGKSVCRVNGKLVPLSVLRDIGASLIDIHGQHENQELMDEKQHIFLLDHFAEEQLISIQ
ELYSSQYDEYRSLKKELASISIDEQLMAQRIDLYQFQMKELEDANLKLGEEDELLDERRRLMNFNKIFERSSAAYEAIQG
ESKGLDWIGNAMGALEDAATIDEQFKEASESVTTAFYALQDAAYQVKNVLDELEFDPARLNEVEQRLALLQNLKRKYGST
VEEILTYYEKIKTELNELLNRDEILQVKERKVLEMESVLNELAAELSTVRKAAAHNLSEAIMAELRELHMEKAKFIVNFD
ELPYFDANGKDQVIFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGITSIIFDEVDTGVSGRVAQAIAEKIAA
VSVNSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLLEIDTDARIEEVSRMISGAEITDLTLQHATELLKMANERKK
QMR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=525492 FJQ98_RS18035 WP_053597075.1 3625686..3627377(-) (recN) [Lysinibacillus agricola strain FJAT-51161]
GTGTTAAGAGAGCTTAGTATTCGAAACTTTGCCATCATTGAAGATTTGACAGTTAGCTTTTCAGATGGTTTAACTGTTTT
AACAGGTGAAACAGGTGCAGGAAAATCAATTATTATTGATGCAGTTCATTTACTTGCTGGCGGTCGAGGAAATTCCGAAT
TCATTCGACATGGGACTAAAAAGGCTGAATTAGGTGGTTTATTTCAAATTTCAAATTCTGGACATCCTGTTCACAAGAAA
CTTGAAGAGGCCGGCATTGAAATCGAAGAAGATACCATTATTTTACGCCGTGATTTAAATGATTCTGGAAAAAGTGTTTG
TAGAGTAAATGGTAAACTTGTGCCATTATCTGTACTACGTGATATTGGTGCTAGCCTCATCGATATTCATGGGCAGCATG
AAAATCAAGAACTCATGGATGAGAAACAGCATATCTTTTTACTTGACCACTTTGCTGAGGAACAACTTATATCAATTCAA
GAATTGTACAGTTCCCAGTATGATGAATATCGTTCGCTTAAAAAAGAATTAGCTTCTATCTCGATTGATGAACAGTTAAT
GGCGCAGCGTATTGATTTGTACCAATTCCAAATGAAAGAGCTAGAGGATGCCAATTTAAAGCTTGGCGAGGAAGATGAGC
TTCTTGATGAACGACGCCGTCTTATGAATTTCAATAAGATTTTCGAACGTTCCAGTGCAGCATATGAAGCTATTCAAGGT
GAATCAAAAGGCCTTGACTGGATTGGCAATGCTATGGGTGCCTTAGAGGATGCTGCGACCATTGACGAGCAATTTAAAGA
GGCATCAGAATCAGTCACAACTGCGTTTTATGCGTTACAAGATGCTGCATATCAGGTCAAAAATGTTTTAGATGAGTTAG
AATTTGACCCTGCTCGTTTAAATGAGGTTGAGCAGCGTTTAGCCTTATTACAAAATTTGAAGCGCAAATATGGCTCAACA
GTCGAAGAGATTTTAACGTATTACGAAAAAATTAAAACAGAGCTTAATGAGCTCTTAAATCGTGACGAAATTTTGCAAGT
AAAAGAACGAAAAGTACTGGAAATGGAATCAGTACTAAATGAGCTTGCTGCAGAACTTTCTACTGTACGAAAGGCAGCTG
CGCATAATCTAAGTGAAGCTATTATGGCCGAACTACGCGAATTACATATGGAAAAAGCCAAATTTATTGTTAATTTTGAT
GAATTGCCTTACTTTGATGCGAATGGTAAAGACCAAGTAATTTTTTATATTTCTACGAATGTGGGCGAACCACCAAAATC
TTTACCAAAAATTGCTTCTGGTGGAGAATTATCGCGAATGATGCTTGCACTTAAAACGATTTTCTCTTCTTCTAACGGCA
TAACATCAATTATTTTTGATGAGGTAGATACAGGTGTAAGTGGACGCGTGGCGCAAGCGATCGCAGAAAAAATTGCAGCG
GTATCCGTTAATTCCCAAGTCTTATGTATTTCGCATTTACCACAAGTGGCTGCGATGGCAGATCATCATTATTTTATCAA
AAAAGAAGTCGAGCATGATCGCACATTTACGTCATTGTTGGAAATAGATACGGATGCTCGTATTGAAGAAGTGAGTCGCA
TGATATCCGGTGCAGAGATTACAGACTTAACGTTGCAGCACGCAACAGAGCTTTTAAAAATGGCAAATGAACGAAAAAAA
CAAATGAGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.899

100

0.552