Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   FJQ98_RS11100 Genome accession   NZ_CP067341
Coordinates   2331543..2333306 (+) Length   587 a.a.
NCBI ID   WP_053596870.1    Uniprot ID   -
Organism   Lysinibacillus agricola strain FJAT-51161     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2326543..2338306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJQ98_RS11080 (FJQ98_11080) - 2327109..2327888 (+) 780 WP_053596867.1 inositol monophosphatase family protein -
  FJQ98_RS11085 (FJQ98_11085) - 2327947..2330076 (+) 2130 WP_201406697.1 extracellular solute-binding protein -
  FJQ98_RS11090 (FJQ98_11090) - 2330168..2330467 (+) 300 WP_075807347.1 SemiSWEET transporter -
  FJQ98_RS11095 (FJQ98_11095) - 2331023..2331472 (+) 450 WP_143115058.1 MarR family transcriptional regulator -
  FJQ98_RS11100 (FJQ98_11100) rcrP 2331543..2333306 (+) 1764 WP_053596870.1 ABC transporter ATP-binding protein Regulator
  FJQ98_RS11105 (FJQ98_11105) rcrQ 2333299..2335128 (+) 1830 WP_053596871.1 ABC transporter ATP-binding protein Regulator
  FJQ98_RS11110 (FJQ98_11110) - 2335524..2336420 (-) 897 WP_053596872.1 LysR family transcriptional regulator -
  FJQ98_RS11115 (FJQ98_11115) - 2336829..2337020 (+) 192 WP_053596873.1 hypothetical protein -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64637.04 Da        Isoelectric Point: 6.1198

>NTDB_id=525487 FJQ98_RS11100 WP_053596870.1 2331543..2333306(+) (rcrP) [Lysinibacillus agricola strain FJAT-51161]
MLKIFKYLKPKEWTLIVASIVFIVGQVYLDLKLPDYMSKITTLVQTEGSKTSEVWAAGGMMLLCALGSMILAVIVGYFAA
RVATSLSKELRKGVFDKTLSFSMEEINGFSIASLITRSTNDITQIQQTVAMGLQVMIKAPILAVWAILKITGKSWEWSAA
TGIAVIVLLIMIGNLIIFVLPKFKVVQKLTDNLNRVAREGLTGLRVVHAYNAQEYQEEKFEQVNKNLTDTNLLVNRLMAI
MQPGMGLIMSGLTLSIYWIGAHLINNAGGMDRIGLFSDMVVFSSYAMQVVMAFMLLSMTFILLPRAAVSAARINEVLDTP
QTIIDGEIQSSPKGIEGEIELRNVSFKYPDAEDYVLKDISFTAHKGETVALIGSTGSGKSTLINLIPRFYDSTEGEVLVD
GINVKEYAQEALHNKLGYVSQKVVLFSGTVKSNVTYGDNGQTPSTDEEIKKAVEIAQGKEFVENMDGEYEAAIAQGGTNL
SGGQKQRLSIARAVNRNPEIFIFDDSFSALDYKTDRQLRSTLKKETKGATSLIVAQRIGTIKDADKIIVLDEGKIVGMGK
HSELLKTCKTYQEIAYSQLSKEELENE

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=525487 FJQ98_RS11100 WP_053596870.1 2331543..2333306(+) (rcrP) [Lysinibacillus agricola strain FJAT-51161]
ATGTTGAAAATATTTAAATACTTAAAACCGAAAGAATGGACGCTAATTGTAGCTAGTATTGTGTTCATTGTAGGGCAAGT
TTATTTGGATTTGAAGTTACCGGATTATATGTCTAAAATTACGACCCTTGTACAAACAGAGGGCAGTAAAACGAGCGAGG
TATGGGCAGCTGGAGGGATGATGCTTTTATGTGCCCTTGGCAGTATGATATTGGCAGTCATTGTGGGCTATTTTGCGGCA
AGGGTAGCAACATCTCTTTCAAAGGAATTGCGAAAAGGAGTATTTGACAAAACGTTATCTTTCTCTATGGAGGAGATTAA
TGGTTTTTCGATCGCAAGTCTTATTACTCGTTCTACTAATGATATAACGCAAATACAGCAAACTGTTGCAATGGGTCTTC
AAGTTATGATTAAGGCTCCGATCCTTGCAGTATGGGCTATTTTGAAGATTACCGGAAAAAGTTGGGAGTGGTCAGCGGCA
ACAGGAATAGCAGTAATTGTTTTACTTATTATGATAGGCAACCTGATCATCTTTGTGCTACCGAAATTTAAAGTCGTTCA
AAAACTGACAGATAATCTTAACCGAGTAGCAAGAGAAGGTTTAACTGGTCTTCGTGTTGTTCATGCCTATAACGCACAAG
AGTATCAGGAAGAAAAATTCGAACAAGTAAATAAGAATTTAACAGATACAAATCTTTTGGTGAACCGACTTATGGCCATT
ATGCAGCCGGGGATGGGTCTGATTATGTCAGGTTTAACTCTTTCTATCTACTGGATTGGAGCGCATTTGATTAATAATGC
AGGGGGGATGGATCGAATCGGTTTGTTCAGTGATATGGTCGTATTTTCATCTTATGCAATGCAGGTGGTTATGGCATTTA
TGCTATTATCAATGACGTTCATTTTGCTACCGAGAGCAGCAGTATCTGCAGCACGTATTAATGAAGTACTAGATACACCT
CAGACAATTATTGATGGAGAAATACAATCGTCGCCTAAGGGTATCGAAGGTGAGATCGAACTCCGTAATGTTAGTTTTAA
ATATCCTGATGCAGAAGACTATGTTTTAAAGGATATTAGCTTTACAGCACATAAAGGTGAAACTGTCGCTTTAATCGGTT
CTACGGGTAGTGGTAAAAGTACGCTCATTAATTTAATCCCAAGATTTTACGATTCTACTGAGGGGGAGGTATTAGTCGAC
GGCATTAATGTGAAAGAATATGCACAAGAAGCTCTTCATAATAAGCTAGGTTACGTTTCTCAAAAAGTCGTATTATTTTC
AGGTACAGTAAAATCTAATGTTACTTACGGTGATAACGGCCAGACCCCATCAACAGATGAGGAGATCAAAAAAGCGGTGG
AAATTGCCCAAGGTAAAGAATTTGTGGAGAACATGGATGGTGAATATGAAGCGGCTATTGCTCAAGGCGGAACAAATCTC
TCAGGAGGACAGAAACAACGTCTTTCTATTGCACGAGCAGTGAATAGAAATCCAGAAATCTTTATTTTTGATGACTCGTT
CTCTGCCTTAGATTATAAAACGGACCGTCAACTTCGTTCTACTTTGAAAAAAGAAACGAAAGGTGCAACTTCTTTGATTG
TGGCACAGCGGATTGGAACGATTAAAGATGCTGATAAAATTATTGTTCTTGATGAAGGTAAAATCGTTGGTATGGGGAAA
CATAGTGAATTATTGAAAACTTGTAAGACTTATCAGGAAATCGCCTATTCGCAACTATCGAAGGAGGAGTTGGAAAATGA
GTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(18-293)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

55.017

100

0.56