Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   K6125_RS10710 Genome accession   NZ_CP082077
Coordinates   2130785..2132212 (+) Length   475 a.a.
NCBI ID   WP_000980569.1    Uniprot ID   A0A0H3ELL6
Organism   Escherichia coli strain MS20657     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2125785..2137212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6125_RS10680 (K6125_10610) pduU 2126163..2126513 (+) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -
  K6125_RS10685 (K6125_10615) - 2126518..2126961 (+) 444 WP_001189443.1 EutP/PduV family microcompartment system protein -
  K6125_RS10690 (K6125_10620) tmaR 2127061..2127390 (-) 330 WP_000450409.1 DUF496 family protein -
  K6125_RS10695 (K6125_10625) yeeA 2127562..2128620 (-) 1059 WP_001200890.1 FUSC family protein -
  K6125_RS10700 (K6125_10630) sbmC 2128818..2129291 (-) 474 WP_001105375.1 DNA gyrase inhibitor SbmC -
  K6125_RS10705 (K6125_10635) dacD 2129410..2130576 (-) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  K6125_RS10710 (K6125_10640) sbcB 2130785..2132212 (+) 1428 WP_000980569.1 exodeoxyribonuclease I Machinery gene
  K6125_RS10715 (K6125_10645) plaP 2132286..2133644 (-) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  K6125_RS10720 (K6125_10650) yoeI 2133634..2133696 (-) 63 WP_010723108.1 membrane protein YoeI -
  K6125_RS10725 (K6125_10655) yeeY 2133911..2134840 (-) 930 WP_024192606.1 LysR substrate-binding domain-containing protein -
  K6125_RS10730 (K6125_10660) yeeZ 2134886..2135710 (-) 825 WP_302364159.1 SDR family oxidoreductase -
  K6125_RS10735 (K6125_10665) yoeB 2135793..2136047 (-) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  K6125_RS10740 (K6125_10670) yefM 2136044..2136295 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  K6125_RS10745 (K6125_10675) hisL 2136578..2136628 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54499.79 Da        Isoelectric Point: 5.4720

>NTDB_id=525449 K6125_RS10710 WP_000980569.1 2130785..2132212(+) (sbcB) [Escherichia coli strain MS20657]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=525449 K6125_RS10710 WP_000980569.1 2130785..2132212(+) (sbcB) [Escherichia coli strain MS20657]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTACGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTACATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGAGAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3ELL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583