Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   DESMER_RS17955 Genome accession   NC_018515
Coordinates   3891207..3892142 (-) Length   311 a.a.
NCBI ID   WP_014904484.1    Uniprot ID   A0A1G7RF96
Organism   Desulfosporosinus meridiei DSM 13257     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3886207..3897142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DESMER_RS17935 (Desmer_3735) - 3887558..3887926 (-) 369 WP_014904480.1 putative DNA-binding protein -
  DESMER_RS17940 (Desmer_3736) - 3887999..3889303 (-) 1305 WP_014904481.1 amidohydrolase -
  DESMER_RS17945 (Desmer_3737) mtnA 3889372..3890409 (-) 1038 WP_014904482.1 S-methyl-5-thioribose-1-phosphate isomerase -
  DESMER_RS17950 (Desmer_3738) mtnP 3890425..3891207 (-) 783 WP_042333958.1 S-methyl-5'-thioadenosine phosphorylase -
  DESMER_RS17955 (Desmer_3739) pilA 3891207..3892142 (-) 936 WP_014904484.1 signal recognition particle-docking protein FtsY Machinery gene
  DESMER_RS17960 (Desmer_3740) smc 3892750..3896346 (-) 3597 WP_014904485.1 chromosome segregation protein SMC -
  DESMER_RS17965 (Desmer_3741) rnc 3896339..3897124 (-) 786 WP_014904486.1 ribonuclease III -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 34076.14 Da        Isoelectric Point: 5.0884

>NTDB_id=52539 DESMER_RS17955 WP_014904484.1 3891207..3892142(-) (pilA) [Desulfosporosinus meridiei DSM 13257]
MAGFFAKLKEGLTKTRQNFVEKVEEVFTGRKKIDEELYEELEEVLIRSDVGVNTSFELVERLRKEVKQRKISDPNELTAV
LQELISELLGEKSSITFAKQGPSIILVVGVNGVGKTTTIGKLANWLKQDGKRVLLAAGDTFRAAAIDQLEVWGERAGVEI
IKQREGADPAAVAYDAVQAAKSRSVDVVIVDTAGRLHNKVNLMEELRKVKRVMEREIPGAPHEVLLVLDATTGQNALQQA
KLFQEVAGVTGIVLTKLDGTAKGGVVLGIQGETRIPVKWIGIGEGMEDLRPFDPEDFAAALFGKNDEGERF

Nucleotide


Download         Length: 936 bp        

>NTDB_id=52539 DESMER_RS17955 WP_014904484.1 3891207..3892142(-) (pilA) [Desulfosporosinus meridiei DSM 13257]
ATGGCAGGTTTTTTTGCAAAGCTTAAAGAAGGTCTTACTAAAACAAGACAGAATTTCGTGGAAAAGGTTGAAGAGGTTTT
CACTGGGCGTAAGAAAATTGATGAAGAGTTATATGAAGAACTGGAAGAGGTGTTAATTCGCTCAGATGTGGGTGTTAACA
CTTCTTTCGAATTGGTCGAACGGTTACGTAAGGAAGTTAAACAGCGTAAAATTTCAGATCCTAATGAGCTGACTGCTGTG
CTTCAAGAATTAATCTCGGAATTATTGGGAGAGAAATCAAGCATTACTTTCGCTAAGCAAGGGCCAAGTATTATTCTTGT
TGTTGGGGTCAATGGGGTTGGCAAAACTACCACAATCGGTAAGCTTGCTAATTGGTTAAAACAGGATGGCAAGCGTGTTT
TGTTGGCCGCTGGGGATACTTTTCGGGCAGCTGCCATTGATCAATTGGAGGTTTGGGGCGAGAGAGCCGGAGTAGAGATT
ATCAAGCAACGTGAAGGTGCTGATCCTGCGGCAGTTGCTTATGACGCTGTACAAGCAGCTAAGTCCCGCAGTGTTGATGT
TGTAATTGTAGATACTGCTGGACGTCTTCATAATAAAGTGAACTTGATGGAAGAATTGCGGAAGGTCAAAAGGGTTATGG
AACGAGAAATTCCTGGGGCTCCGCATGAGGTGTTATTAGTATTGGATGCCACGACAGGACAAAACGCTTTGCAGCAAGCA
AAGCTATTTCAGGAAGTAGCGGGAGTTACGGGAATAGTCCTGACTAAGCTAGATGGGACTGCGAAAGGGGGAGTAGTGTT
AGGAATTCAAGGGGAAACTCGTATTCCTGTGAAATGGATTGGAATTGGGGAAGGAATGGAAGATTTGCGTCCCTTTGATC
CTGAGGATTTTGCTGCTGCACTTTTTGGAAAAAATGATGAGGGGGAGAGATTCTGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(20-83)

SRP54-type protein, GTPase domain (SRP54)

(102-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1G7RF96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.669

97.106

0.482

Multiple sequence alignment