Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JJB24_RS07655 Genome accession   NZ_CP067299
Coordinates   1611014..1611643 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain ABW_A33     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1606014..1616643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJB24_RS07635 (JJB24_07635) ycbZ 1606415..1608175 (-) 1761 WP_000152888.1 Lon protease family protein -
  JJB24_RS07640 (JJB24_07640) matP 1608361..1608813 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JJB24_RS07645 (JJB24_07645) ompA 1608889..1609929 (-) 1041 WP_001400178.1 porin OmpA -
  JJB24_RS07650 (JJB24_07650) sulA 1610286..1610795 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JJB24_RS07655 (JJB24_07655) sxy/tfoX 1611014..1611643 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JJB24_RS07660 (JJB24_07660) yccS 1611606..1613768 (-) 2163 WP_208787015.1 YccS family putative transporter -
  JJB24_RS07665 (JJB24_07665) yccF 1613778..1614224 (-) 447 WP_001261235.1 YccF domain-containing protein -
  JJB24_RS07670 (JJB24_07670) helD 1614347..1616401 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=525352 JJB24_RS07655 WP_000839153.1 1611014..1611643(+) (sxy/tfoX) [Escherichia coli strain ABW_A33]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=525352 JJB24_RS07655 WP_000839153.1 1611014..1611643(+) (sxy/tfoX) [Escherichia coli strain ABW_A33]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1