Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   K6140_RS20725 Genome accession   NZ_CP082073
Coordinates   4262927..4263919 (+) Length   330 a.a.
NCBI ID   WP_074150188.1    Uniprot ID   -
Organism   Escherichia coli strain MS20659     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4257927..4268919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6140_RS20700 (K6140_20525) rbsD 4258051..4258470 (+) 420 WP_001350412.1 D-ribose pyranase -
  K6140_RS20705 (K6140_20530) rbsA 4258478..4259983 (+) 1506 WP_000387762.1 ribose ABC transporter ATP-binding protein RbsA -
  K6140_RS20710 (K6140_20535) rbsC 4259988..4260953 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  K6140_RS20715 (K6140_20540) rbsB 4260978..4261868 (+) 891 WP_001297966.1 ribose ABC transporter substrate-binding protein RbsB -
  K6140_RS20720 (K6140_20545) rbsK 4261994..4262923 (+) 930 WP_001361088.1 ribokinase -
  K6140_RS20725 (K6140_20550) cytR 4262927..4263919 (+) 993 WP_074150188.1 ribose operon transcriptional repressor RbsR Regulator
  K6140_RS20730 (K6140_20555) mdtD 4263885..4265312 (-) 1428 WP_001280828.1 multidrug transporter subunit MdtD -
  K6140_RS20735 (K6140_20560) yieP 4265335..4266027 (-) 693 WP_001131161.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36669.94 Da        Isoelectric Point: 5.0756

>NTDB_id=525317 K6140_RS20725 WP_074150188.1 4262927..4263919(+) (cytR) [Escherichia coli strain MS20659]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAEMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=525317 K6140_RS20725 WP_074150188.1 4262927..4263919(+) (cytR) [Escherichia coli strain MS20659]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACAGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGTAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATTGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCTGAGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACAACTATACACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTACAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGTGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.747

100

0.37
  cytR Vibrio cholerae C6706

38.762

93.03

0.361