Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JJB17_RS06365 Genome accession   NZ_CP067245
Coordinates   1272801..1273430 (-) Length   209 a.a.
NCBI ID   WP_208789934.1    Uniprot ID   -
Organism   Escherichia coli strain OW1E2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1267801..1278430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJB17_RS06350 (JJB17_06345) helD 1268043..1270097 (-) 2055 WP_001295354.1 DNA helicase IV -
  JJB17_RS06355 (JJB17_06350) yccF 1270220..1270666 (+) 447 WP_001261235.1 YccF domain-containing protein -
  JJB17_RS06360 (JJB17_06355) yccS 1270676..1272838 (+) 2163 WP_208789933.1 YccS family putative transporter -
  JJB17_RS06365 (JJB17_06360) sxy/tfoX 1272801..1273430 (-) 630 WP_208789934.1 TfoX/Sxy family DNA transformation protein Regulator
  JJB17_RS06370 (JJB17_06365) sulA 1273649..1274158 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JJB17_RS06375 (JJB17_06370) ompA 1274515..1275555 (+) 1041 WP_000750416.1 porin OmpA -
  JJB17_RS06380 (JJB17_06375) matP 1275631..1276083 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JJB17_RS06385 (JJB17_06380) ycbZ 1276269..1278029 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24120.93 Da        Isoelectric Point: 9.2180

>NTDB_id=525238 JJB17_RS06365 WP_208789934.1 1272801..1273430(-) (sxy/tfoX) [Escherichia coli strain OW1E2]
MKSLSYKRIYKSQEYLATLGTIEYRSSFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=525238 JJB17_RS06365 WP_208789934.1 1272801..1273430(-) (sxy/tfoX) [Escherichia coli strain OW1E2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATC
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995