Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JJB20_RS21365 Genome accession   NZ_CP067232
Coordinates   4479059..4479688 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain SBF45     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4474059..4484688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJB20_RS21350 (JJB20_21350) helD 4474301..4476355 (-) 2055 WP_000420536.1 DNA helicase IV -
  JJB20_RS21355 (JJB20_21355) yccF 4476478..4476924 (+) 447 WP_001261235.1 YccF domain-containing protein -
  JJB20_RS21360 (JJB20_21360) yccS 4476934..4479096 (+) 2163 WP_000875015.1 YccS family putative transporter -
  JJB20_RS21365 (JJB20_21365) sxy/tfoX 4479059..4479688 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JJB20_RS21370 (JJB20_21370) sulA 4479907..4480416 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JJB20_RS21375 (JJB20_21375) ompA 4480773..4481825 (+) 1053 WP_000750419.1 porin OmpA -
  JJB20_RS21380 (JJB20_21380) matP 4481900..4482352 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  JJB20_RS21385 (JJB20_21385) ycbZ 4482538..4484298 (+) 1761 WP_032141797.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=525189 JJB20_RS21365 WP_000839153.1 4479059..4479688(-) (sxy/tfoX) [Escherichia coli strain SBF45]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=525189 JJB20_RS21365 WP_000839153.1 4479059..4479688(-) (sxy/tfoX) [Escherichia coli strain SBF45]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1