Detailed information NTG0052513

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: GEM_RS03115
• Genome accession: NC_018513
• Coordinates: 699985..701139 (-)
• Length: 384 a.a.
• NCBI ID: WP_014895997.1
• Uniprot ID: A0A9W3P871
• Organism: Burkholderia cepacia GG4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 694985..706139

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GEM_RS03095 (GEM_0626)	-	695523..695906 (+)	384	WP_014895993.1	nuclear transport factor 2 family protein	-
GEM_RS03100 (GEM_0627)	leuA	696050..697696 (-)	1647	WP_014895994.1	2-isopropylmalate synthase	-
GEM_RS03105 (GEM_0628)	ybiB	698088..699062 (-)	975	WP_014895995.1	DNA-binding protein YbiB	-
GEM_RS03110 (GEM_0629)	maiA	699263..699907 (+)	645	WP_014895996.1	maleylacetoacetate isomerase	-
GEM_RS03115 (GEM_0630)	pilA	699985..701139 (-)	1155	WP_014895997.1	signal recognition particle-docking protein FtsY	Machinery gene
GEM_RS03120 (GEM_0631)	rsmD	701341..701955 (+)	615	WP_014895998.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
GEM_RS03125 (GEM_0632)	coaD	702068..702565 (+)	498	WP_014895999.1	pantetheine-phosphate adenylyltransferase	-
GEM_RS03130 (GEM_0633)	-	702625..702891 (+)	267	WP_014896000.1	YfhL family 4Fe-4S dicluster ferredoxin	-
GEM_RS03135 (GEM_0634)	hisC	702983..704050 (-)	1068	WP_014896001.1	histidinol-phosphate transaminase	-
GEM_RS03140 (GEM_0635)	pth	704180..704779 (-)	600	WP_014896002.1	aminoacyl-tRNA hydrolase	-
GEM_RS03145 (GEM_0636)	-	704901..705506 (-)	606	WP_014896003.1	50S ribosomal protein L25/general stress protein Ctc	-

Sequence

Protein

• Length: 384 a.a.
• Molecular weight: 40815.70 Da
• Isoelectric Point: 4.9500

>NTDB_id=52513 GEM_RS03115 WP_014895997.1 699985..701139(-) (pilA) [Burkholderia cepacia GG4]
MFSFFKRFKKTQEPDSAESQSADAPLQDEPSDAPAPAARQAIEAPRAPAQPAAPAVVMTVTPTNDGSNEVVEAVEIVPPP
TQDASAKKSWLARLKTGLAKTGSSITGVFVNTKIDEDLYEELEAALLMSDAGVDATEYLLGALREKVRAGRLTDPQQVKD
ALHDLLVELLTPLEKSLMLGRAQPLVMMITGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAVWGERNNV
TVVQQESGDPAAVIFDAVSAARARKIDVMMADTAGRLPTQLHLMEELKKVKRVISKAHDGAPHEVLLVIDANTGQNGLTQ
VKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAVEFADALLG

Nucleotide

• Length: 1155 bp

>NTDB_id=52513 GEM_RS03115 WP_014895997.1 699985..701139(-) (pilA) [Burkholderia cepacia GG4]
ATGTTCAGCTTCTTCAAACGATTCAAGAAAACGCAGGAGCCCGACTCCGCGGAATCGCAATCGGCCGACGCGCCGCTCCA
GGACGAGCCGTCCGACGCGCCCGCCCCCGCCGCGCGCCAGGCGATCGAAGCGCCGCGAGCGCCCGCGCAACCGGCCGCGC
CGGCCGTCGTGATGACCGTCACGCCGACCAACGACGGCAGCAACGAAGTCGTCGAAGCGGTCGAGATCGTGCCGCCGCCG
ACGCAGGACGCATCCGCGAAGAAATCGTGGCTCGCGCGCCTGAAAACGGGGCTCGCGAAGACGGGCTCAAGCATCACCGG
CGTGTTCGTCAACACGAAGATCGACGAGGATCTGTATGAAGAGCTCGAAGCCGCGCTGCTGATGTCGGACGCCGGCGTCG
ACGCGACCGAGTACCTGCTCGGCGCGCTGCGCGAGAAGGTGCGCGCAGGCCGGCTGACCGACCCACAGCAGGTGAAGGAC
GCGCTGCACGACCTGCTCGTCGAACTGCTGACGCCGCTCGAGAAGTCGCTGATGCTAGGCCGCGCGCAGCCGCTCGTGAT
GATGATCACGGGCGTGAACGGCGCGGGCAAGACGACCAGCATCGGCAAGCTTGCGAAGCATCTGCAGAGCTTCGACCAGT
CGGTGCTGCTGGCCGCGGGCGACACGTTCCGCGCGGCCGCGCGCGAACAGCTGGCGGTCTGGGGTGAGCGCAACAACGTG
ACGGTCGTGCAGCAGGAAAGCGGCGACCCGGCCGCGGTGATCTTCGACGCGGTCAGCGCCGCGCGCGCGCGCAAGATCGA
CGTGATGATGGCCGACACGGCCGGCCGCCTGCCGACGCAGCTCCACCTGATGGAAGAGCTGAAGAAGGTGAAGCGCGTGA
TCTCGAAGGCGCACGACGGCGCCCCTCACGAGGTGCTGCTCGTGATCGACGCGAACACGGGCCAGAACGGGCTCACGCAG
GTGAAGGCATTCGACGATGCGCTCGGTCTCACGGGCCTGATCGTCACGAAGCTCGACGGCACCGCGAAGGGCGGGATTCT
CGCCGCGATCGCGCGGCAGCGCCCGGTGCCGGTCTACTTCATCGGCGTCGGCGAGAAGGTCGAGGACCTGCAGCCGTTCA
GCGCCGTGGAATTCGCGGACGCGCTGCTCGGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (185-384)

• SRP54-type protein, helical bundle domain (SRP54_N) (102-164)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	52.758	100	0.573