Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   BTF1_RS25675 Genome accession   NC_018508
Coordinates   5040916..5042043 (+) Length   375 a.a.
NCBI ID   WP_000470754.1    Uniprot ID   A0A9W3P6A6
Organism   Bacillus thuringiensis HD-789     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5035916..5047043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTF1_RS25645 (BTF1_26040) spoIIIJ 5035956..5036723 (-) 768 WP_000727741.1 YidC family membrane integrase SpoIIIJ -
  BTF1_RS25650 (BTF1_26045) rnpA 5036776..5037123 (-) 348 WP_000726621.1 ribonuclease P protein component -
  BTF1_RS25655 (BTF1_26050) rpmH 5037200..5037334 (-) 135 WP_000831901.1 50S ribosomal protein L34 -
  BTF1_RS25660 (BTF1_26055) dnaA 5037899..5039239 (+) 1341 WP_000428018.1 chromosomal replication initiator protein DnaA -
  BTF1_RS25665 (BTF1_26060) dnaN 5039418..5040563 (+) 1146 WP_001212884.1 DNA polymerase III subunit beta -
  BTF1_RS25670 (BTF1_26065) yaaA 5040691..5040903 (+) 213 WP_000680510.1 S4 domain-containing protein YaaA -
  BTF1_RS25675 (BTF1_26070) recF 5040916..5042043 (+) 1128 WP_000470754.1 DNA replication/repair protein RecF Machinery gene
  BTF1_RS25680 (BTF1_26075) gyrB 5042083..5044005 (+) 1923 WP_000435979.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  BTF1_RS25685 (BTF1_26080) gyrA 5044094..5046565 (+) 2472 WP_001282868.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43318.66 Da        Isoelectric Point: 6.7809

>NTDB_id=52506 BTF1_RS25675 WP_000470754.1 5040916..5042043(+) (recF) [Bacillus thuringiensis HD-789]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEEFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPIYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKDAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=52506 BTF1_RS25675 WP_000470754.1 5040916..5042043(+) (recF) [Bacillus thuringiensis HD-789]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAAAATGCACAAGGGAAAACAAACTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAACTTATCCGCTGGGATGAAGAGTTTGGTCAAATAAAAGGGAAATTACAAAAAAGAAACAGTTCT
TTGTCTTTGGAATTAAATATTTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAGTTAAGTCAATA
TATTGGCGTGATGAACGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCTCCTATATATTTGTATGAATTAAGTCAATATCAAAAGGTGCTCACGCAACGA
AATCACTTGTTGAAAAAAATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTAATTGA
GCATGGTGCGAAAATACTGCAAAAACGTTTTGAATTTTTGCATTTGCTACAGGAATGGGCAGCTCCAATTCATCGCGGTA
TAAGCCGTGGATTAGAAGAGTTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGGCAACAACGAACGACCGCACTAT
CCCTAAAATTAGCTGAAATTGAATTAATTTATTCAGAGGTTAAAGAATATCCAATCCTTTTGCTGGATGATGTTTTATCA
GAATTAGACGATTATCGTCAATCACATCTGTTAAATACAATTCAAGGAAAGGTGCAAACATTTGTTACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGATGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.033

98.133

0.648

Multiple sequence alignment