Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JIO00_RS25360 Genome accession   NZ_CP067098
Coordinates   5605578..5606945 (-) Length   455 a.a.
NCBI ID   WP_010467488.1    Uniprot ID   A0A024EEL0
Organism   Pseudomonas sp. SW-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5600578..5611945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JIO00_RS25335 (JIO00_25335) - 5600729..5601412 (+) 684 WP_200667052.1 GntR family transcriptional regulator -
  JIO00_RS25340 (JIO00_25340) yjiA 5601512..5602480 (-) 969 WP_083375716.1 GTPase -
  JIO00_RS25345 (JIO00_25345) - 5602643..5602840 (-) 198 WP_010467494.1 YbdD/YjiX family protein -
  JIO00_RS25350 (JIO00_25350) - 5602855..5604921 (-) 2067 WP_145308794.1 carbon starvation CstA family protein -
  JIO00_RS25355 (JIO00_25355) - 5605081..5605449 (+) 369 WP_200667053.1 PilZ domain-containing protein -
  JIO00_RS25360 (JIO00_25360) radA 5605578..5606945 (-) 1368 WP_010467488.1 DNA repair protein RadA Machinery gene
  JIO00_RS25365 (JIO00_25365) - 5606991..5607533 (-) 543 WP_200667054.1 ankyrin repeat domain-containing protein -
  JIO00_RS25370 (JIO00_25370) katB 5607594..5609135 (-) 1542 WP_200667055.1 catalase KatB -
  JIO00_RS25375 (JIO00_25375) mscL 5609421..5609834 (+) 414 WP_010467482.1 large-conductance mechanosensitive channel protein MscL -
  JIO00_RS25380 (JIO00_25380) - 5609882..5610658 (-) 777 WP_010467481.1 ferredoxin--NADP reductase -
  JIO00_RS25385 (JIO00_25385) - 5611005..5611715 (+) 711 WP_200667056.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48744.25 Da        Isoelectric Point: 6.8987

>NTDB_id=525035 JIO00_RS25360 WP_010467488.1 5605578..5606945(-) (radA) [Pseudomonas sp. SW-3]
MAKAKRMYGCTECGSTFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWTGQQAQIKTLAEVSVEEIPRFSTASSEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKVMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=525035 JIO00_RS25360 WP_010467488.1 5605578..5606945(-) (radA) [Pseudomonas sp. SW-3]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCTCAACCTTCCCCAAGTGGGCCGGCCAGTGCGGCGAGTG
CGGGGCCTGGAACACGCTGACCGAAACCATGGTCGAGAGCGGCGGCGCCGCAGCACCCAGCGGTCGCACCGGTTGGACCG
GCCAGCAGGCTCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAGATTCCGCGCTTCTCCACTGCGTCCAGTGAACTC
GATCGGGTGTTGGGCGGTGGCCTGGTGGATGGTTCGGTGGTGCTGATCGGCGGTGATCCGGGCATCGGCAAGTCGACCAT
TCTCCTGCAAACCTTGTGCAACCTCGCCAAAGTCATGCCGGCGCTGTACGTCACCGGTGAAGAATCCCAGCAACAGGTGG
CCATGCGCGCCCGACGTCTGGGCCTGCCGCAGGATCAGCTGCGGGTGATGACCGAAACCTGCATCGAAACCATCATTGCC
ACCGCCCGGGTCGAAAAGCCCAAGGTCATGGTGATCGACTCCATTCAGACCATCTTCACCGAACAACTGCAATCGGCACC
GGGCGGCGTGTCGCAGGTGAGGGAAAGTGCCGCGTTGCTGGTGCGGTATGCCAAGCAGAGCGGCACGGCGATTTTCCTGG
TCGGCCACGTGACAAAAGAAGGCGCCTTGGCCGGGCCGCGCGTGCTGGAGCACATGGTCGATACGGTGCTGTATTTCGAA
GGCGAATCCGATGGACGGCTGCGTCTGTTGCGCGCGGTGAAAAACCGTTTCGGCGCTGTCAACGAGTTGGGCGTTTTCGG
CATGACCGACAAGGGCCTGAAAGAAGTCTCCAACCCGTCAGCGATTTTTCTCACTCGTGCGCAAGAAGAAGTTCCCGGCA
GCGTGGTCATGGCGACGTGGGAAGGAACGCGACCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCATTTGGCG
AACCCGCGTCGGGTCACGCTGGGGCTGGATCAGAATCGTCTGGCGATGTTGCTCGCGGTGCTGCATCGTCACGGCGGGAT
TCCGACCCACGATCAGGACGTCTTCCTCAACGTGGTCGGTGGGGTGAAGGTGCTGGAAACGGCCTCCGACCTGGCGCTGA
TGGCGGCGGTCATGTCCAGTTTGCGCAACCGCCCGCTGCCCCATGATTTGCTGGTGTTCGGTGAAGTCGGGCTGTCGGGC
GAAGTGCGCCCGGTGCCGAGTGGCCAGGAACGCTTGAAGGAAGCCGCCAAGCACGGCTTCAAACGCGCCATCGTGCCCAA
GGGCAATGCGCCCAAGGAAGCGCCGCCGGGGTTGCAGATTATTGCCGTGACCCGTCTGGAGCAGGCCCTCGACGCATTGT
TCGAGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A024EEL0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.796

100

0.49
  radA Streptococcus pneumoniae Rx1

46.739

100

0.473
  radA Streptococcus pneumoniae R6

46.739

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.739

100

0.473
  radA Streptococcus pneumoniae D39

46.739

100

0.473
  radA Streptococcus mitis SK321

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.711

100

0.468