Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   T15_RS01310 Genome accession   NC_022665
Coordinates   227941..228654 (-) Length   237 a.a.
NCBI ID   WP_012774930.1    Uniprot ID   A0A0H3MT72
Organism   Streptococcus suis T15     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 222941..233654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  T15_RS01280 (T15_0225) - 222971..223360 (-) 390 WP_023369199.1 DUF1310 family protein -
  T15_RS01285 (T15_0226) - 223386..223649 (-) 264 WP_022540536.1 hypothetical protein -
  T15_RS01290 (T15_0227) - 223642..224034 (-) 393 WP_014636774.1 DUF1310 family protein -
  T15_RS01295 (T15_0228) mutS/mutS2 224200..226533 (-) 2334 WP_023369201.1 endonuclease MutS2 Machinery gene
  T15_RS01300 (T15_0229) - 227027..227575 (-) 549 WP_023369202.1 CvpA family protein -
  T15_RS01305 (T15_0230) - 227572..227883 (-) 312 WP_002935948.1 hypothetical protein -
  T15_RS01310 (T15_0231) treR 227941..228654 (-) 714 WP_012774930.1 trehalose operon repressor Regulator
  T15_RS01315 (T15_0232) treP 228886..230880 (+) 1995 WP_023369204.1 PTS system trehalose-specific EIIBC component -
  T15_RS01320 (T15_0233) treC 230961..232586 (+) 1626 WP_023369206.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27200.07 Da        Isoelectric Point: 6.7422

>NTDB_id=52503 T15_RS01310 WP_012774930.1 227941..228654(-) (treR) [Streptococcus suis T15]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=52503 T15_RS01310 WP_012774930.1 227941..228654(-) (treR) [Streptococcus suis T15]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCATTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCGATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAACAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MT72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515