Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JI721_RS07600 Genome accession   NZ_CP067097
Coordinates   1654659..1656017 (+) Length   452 a.a.
NCBI ID   WP_274457419.1    Uniprot ID   -
Organism   Alicyclobacillus cycloheptanicus strain SCH     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1649659..1661017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JI721_RS07580 (JI721_07590) - 1649935..1650411 (+) 477 WP_274457416.1 CtsR family transcriptional regulator -
  JI721_RS07585 (JI721_07595) - 1650503..1651015 (+) 513 WP_274457732.1 UvrB/UvrC motif-containing protein -
  JI721_RS07590 (JI721_07600) - 1651028..1652104 (+) 1077 WP_274457417.1 protein arginine kinase -
  JI721_RS07595 (JI721_07605) - 1652105..1654540 (+) 2436 WP_274457418.1 ATP-dependent Clp protease ATP-binding subunit -
  JI721_RS07600 (JI721_07610) radA 1654659..1656017 (+) 1359 WP_274457419.1 DNA repair protein RadA Machinery gene
  JI721_RS07605 (JI721_07615) disA 1656028..1657107 (+) 1080 WP_274457420.1 DNA integrity scanning diadenylate cyclase DisA -
  JI721_RS07610 (JI721_07620) pssA 1657202..1657936 (+) 735 WP_274457421.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  JI721_RS07615 (JI721_07625) - 1658222..1659316 (+) 1095 WP_274457422.1 PIN/TRAM domain-containing protein -
  JI721_RS07620 (JI721_07630) - 1659458..1660279 (+) 822 WP_274457423.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  JI721_RS07625 (JI721_07635) ispF 1660326..1660814 (+) 489 WP_274457424.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 49032.99 Da        Isoelectric Point: 6.8755

>NTDB_id=525005 JI721_RS07600 WP_274457419.1 1654659..1656017(+) (radA) [Alicyclobacillus cycloheptanicus strain SCH]
MAKSHTQFVCQSCGHVSVKWAGRCAGCGEWNTYVEEVRAPAQARSFGRTGVQTGPQRIPDIPSQLEARVPTGFREYDRVL
GGGVVPGSLVLIGGDPGIGKSTLLLQFSHTVAGRGHTVLYISGEESANQLKLRAERIEATHENLFVLSETDLDLAVRAVE
QVKPDFLIVDSIQTVYRPSLTSAPGSVAQVRECTSALLRLAKDLNIATFIVGHVTKDGNLAGPRLLEHMVDAVLYFEGER
HHAFRVLRAVKNRFGSTNELAIFEMKNEGLEEVANPSEMFLSERAERTPGSAVVAALEGSRPLLLEVQALVASSSFGTPK
RMSTGADHNRVSLVMAVLEKRLGLQLQASDAYVNLAGGMRVEEPAIDLGVALAVASSFRDRPLADGDVYIGEVGLTGEVR
SVSRLEQRIREAEKLGFRRCLVPMHSLRGWRYNGTIQVIGVSTVQEALDLAL

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=525005 JI721_RS07600 WP_274457419.1 1654659..1656017(+) (radA) [Alicyclobacillus cycloheptanicus strain SCH]
ATGGCAAAGTCTCATACACAATTCGTGTGTCAATCCTGCGGCCATGTGTCCGTGAAGTGGGCCGGGCGCTGTGCGGGCTG
CGGGGAATGGAATACGTACGTGGAGGAAGTTCGGGCGCCGGCGCAGGCTCGTTCCTTCGGTCGAACCGGGGTGCAAACAG
GGCCGCAGCGCATTCCGGACATTCCGTCACAGCTGGAGGCTCGCGTGCCGACCGGGTTTCGGGAGTACGACCGGGTACTC
GGCGGCGGCGTGGTCCCGGGTTCCCTGGTGTTGATTGGCGGCGACCCCGGTATCGGGAAATCTACGTTATTATTGCAGTT
CTCGCATACGGTGGCCGGGCGCGGTCATACAGTTCTCTATATATCCGGTGAAGAGTCTGCCAATCAGTTGAAGCTGCGTG
CCGAACGAATTGAGGCGACGCATGAAAACCTGTTTGTCCTGTCGGAGACGGACCTGGACCTTGCGGTTCGGGCCGTCGAA
CAGGTGAAACCGGACTTTCTGATTGTCGACTCGATTCAAACCGTCTATCGTCCGAGCCTGACGTCCGCCCCGGGGAGTGT
CGCCCAGGTTCGAGAGTGCACGAGCGCGCTGCTCAGACTCGCCAAGGATCTCAATATCGCCACGTTCATCGTCGGTCACG
TGACGAAAGACGGCAACCTGGCGGGGCCGCGTTTGCTTGAACACATGGTTGACGCCGTACTATACTTTGAGGGTGAACGG
CACCATGCCTTCCGAGTGCTGCGGGCCGTAAAAAACCGATTTGGGTCAACCAACGAACTGGCCATCTTCGAAATGAAAAA
CGAGGGTCTTGAAGAGGTTGCCAACCCGTCCGAGATGTTTCTTTCGGAACGGGCCGAACGGACGCCGGGCTCTGCTGTGG
TCGCCGCGCTGGAGGGGTCTCGACCGCTGCTGCTGGAGGTACAGGCGCTCGTTGCTTCTTCCAGTTTTGGTACACCCAAA
CGCATGAGCACGGGGGCCGATCACAACCGTGTCAGCCTTGTCATGGCTGTATTGGAGAAGCGGCTCGGCTTGCAGCTGCA
AGCATCCGACGCTTACGTCAACTTGGCGGGCGGGATGCGGGTGGAGGAGCCAGCCATCGATTTGGGCGTGGCGCTCGCCG
TCGCGTCGAGCTTTCGCGACCGGCCGCTTGCGGACGGAGATGTTTATATCGGAGAAGTCGGGCTGACCGGCGAGGTCCGT
TCCGTGTCCCGGCTGGAACAGCGGATTCGGGAAGCGGAGAAACTGGGGTTCCGCCGCTGCCTTGTCCCCATGCACAGCCT
GCGGGGATGGCGGTACAATGGAACGATACAAGTGATTGGCGTATCCACGGTTCAGGAAGCGCTGGATTTGGCTTTGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(336-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

60.526

100

0.611
  radA Streptococcus pneumoniae Rx1

58

99.558

0.577
  radA Streptococcus pneumoniae D39

58

99.558

0.577
  radA Streptococcus pneumoniae TIGR4

58

99.558

0.577
  radA Streptococcus pneumoniae R6

58

99.558

0.577
  radA Streptococcus mitis SK321

58

99.558

0.577
  radA Streptococcus mitis NCTC 12261

57.461

99.336

0.571