Detailed information NTG0524949

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: K6139_RS14470
• Genome accession: NZ_CP082053
• Coordinates: 2924959..2925951 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MS20677
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2919959..2930951

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6139_RS14450 (K6139_14345)	ygbM	2920590..2921366 (+)	777	WP_001539449.1	HPr family phosphocarrier protein	-
K6139_RS14455 (K6139_14350)	ygbN	2921455..2922819 (+)	1365	WP_000104433.1	GntP family transporter	-
K6139_RS14460 (K6139_14355)	-	2922962..2924005 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
K6139_RS14465 (K6139_14360)	-	2924230..2924781 (+)	552	WP_001179442.1	flavodoxin family protein	-
K6139_RS14470 (K6139_14365)	rpoS	2924959..2925951 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
K6139_RS14475 (K6139_14370)	nlpD	2926014..2927108 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
K6139_RS14480 (K6139_14375)	pcm	2927293..2927919 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
K6139_RS14485 (K6139_14380)	surE	2927913..2928674 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
K6139_RS14490 (K6139_14385)	truD	2928655..2929704 (-)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
K6139_RS14495 (K6139_14390)	ispF	2929701..2930180 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
K6139_RS14500 (K6139_14395)	ispD	2930180..2930890 (-)	711	WP_001539454.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=524949 K6139_RS14470 WP_000081550.1 2924959..2925951(-) (rpoS) [Escherichia coli strain MS20677]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=524949 K6139_RS14470 WP_000081550.1 2924959..2925951(-) (rpoS) [Escherichia coli strain MS20677]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715