Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   JCR32_RS24925 Genome accession   NZ_CP067069
Coordinates   4807966..4809315 (-) Length   449 a.a.
NCBI ID   WP_274430502.1    Uniprot ID   -
Organism   Bacillus sp. HNR-4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4802966..4814315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JCR32_RS24890 (JCR32_24780) - 4802994..4803689 (-) 696 WP_274430500.1 hypothetical protein -
  JCR32_RS24895 (JCR32_24785) - 4803676..4804464 (-) 789 WP_076870961.1 hypothetical protein -
  JCR32_RS24900 (JCR32_24790) - 4804496..4805065 (-) 570 WP_076870960.1 hypothetical protein -
  JCR32_RS24905 (JCR32_24795) - 4805183..4805665 (-) 483 WP_000023378.1 hypothetical protein -
  JCR32_RS24910 (JCR32_24800) raiA 4806074..4806616 (-) 543 WP_000671190.1 ribosome-associated translation inhibitor RaiA -
  JCR32_RS24915 (JCR32_24805) cspC 4806938..4807135 (-) 198 WP_001162041.1 cold shock protein CspC -
  JCR32_RS24920 (JCR32_24810) - 4807262..4807966 (-) 705 WP_274430501.1 ComF family protein -
  JCR32_RS24925 (JCR32_24815) comFA 4807966..4809315 (-) 1350 WP_274430502.1 ATP-dependent helicase ComFA Machinery gene
  JCR32_RS24930 (JCR32_24820) - 4809442..4810887 (-) 1446 WP_274430503.1 C40 family peptidase -
  JCR32_RS24935 (JCR32_24825) - 4811035..4811349 (-) 315 WP_000400857.1 helix-turn-helix domain-containing protein -
  JCR32_RS24940 (JCR32_24830) - 4811523..4812365 (-) 843 WP_000844764.1 DegV family protein -
  JCR32_RS24945 (JCR32_24835) - 4812605..4813240 (+) 636 WP_000926683.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51041.56 Da        Isoelectric Point: 9.7356

>NTDB_id=524828 JCR32_RS24925 WP_274430502.1 4807966..4809315(-) (comFA) [Bacillus sp. HNR-4]
MLAGKQLLLEELSSDLRRELSELKKKGEVVCVQGITKNTSKYICQRCGNIEQRLFASFLCKRCGKACAYCRKCITMGRVS
ECTVLVRGIHERNGDRELNPLQWNGALSIGQELAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGIEEALQKGERVCIAT
PRTDVVLELAPRLQEVFPSITVAALYGGSVDHKKDAALVVATTHQLLRYYRAFHVMIVDEIDAFPYHADQMLQYAVRQAM
KEKAARIYLTATPDEKWKRNFRKGKQKGVIVSGRYHRHPLPVPLFSWCGNWKKSLHHKKIPRVLLQWLKMNLNKKYPIFL
FVPHVRYIEEISQLLKGLDNRIDGVHAEDSMRKEKVASFRKGDIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEEPYGEVMYFHYGKTEAMVRAKKHIQSMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=524828 JCR32_RS24925 WP_274430502.1 4807966..4809315(-) (comFA) [Bacillus sp. HNR-4]
ATGCTTGCTGGAAAACAGTTGCTATTAGAAGAACTCTCTTCAGATTTACGGAGAGAATTAAGTGAGTTGAAAAAGAAGGG
AGAGGTTGTATGTGTACAAGGTATAACAAAGAATACTTCTAAATATATATGTCAGCGCTGCGGAAATATAGAGCAACGGC
TATTTGCATCATTTTTATGTAAAAGGTGCGGTAAAGCATGCGCGTATTGCCGGAAGTGTATCACGATGGGGAGAGTTAGC
GAATGTACTGTACTTGTTCGCGGGATTCATGAAAGAAACGGAGACAGGGAGCTAAATCCATTACAGTGGAATGGGGCTTT
ATCGATTGGTCAGGAGTTGGCGGCGCAAGGAGTTATAGAAGCGATTAAGCAGAAAGAATCTTTTTTTATTTGGGCTGTGT
GCGGGGCTGGAAAAACAGAAATGTTATTTTACGGTATAGAAGAGGCGCTCCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCAAGGACGGACGTTGTACTGGAATTAGCGCCGAGATTACAAGAAGTGTTTCCAAGTATAACTGTAGCTGCTTTATACGG
AGGGAGTGTAGATCATAAAAAAGATGCAGCGTTAGTCGTTGCAACGACTCACCAACTGTTACGTTACTATAGAGCGTTCC
ATGTGATGATTGTAGATGAGATTGATGCCTTCCCGTATCATGCAGATCAAATGTTACAGTATGCAGTTAGGCAAGCAATG
AAAGAGAAAGCAGCGCGTATTTATTTAACTGCAACCCCTGATGAAAAATGGAAGCGTAATTTCAGAAAGGGGAAACAAAA
AGGTGTTATTGTGTCAGGACGATACCATCGTCACCCGTTACCAGTTCCTCTATTTAGTTGGTGCGGAAATTGGAAGAAAA
GCCTCCATCATAAAAAAATTCCTCGCGTGTTACTACAATGGTTAAAAATGAACTTAAACAAAAAGTATCCTATTTTTTTA
TTTGTTCCTCATGTGCGATATATAGAAGAAATAAGTCAGTTGTTGAAAGGGTTGGATAATAGAATCGATGGCGTGCATGC
AGAAGATTCGATGAGAAAAGAAAAAGTAGCATCTTTCAGAAAGGGAGACATTCCGTTATTAGTTACAACGACAATTTTAG
AAAGAGGAGTAACTGTGAAGAACTTACAAGTGGCTGTGTTAGGAGCTGAAGAAGAAATTTTTTCAGAGAGTGCGCTCGTA
CAAATTGCAGGCCGAGCGGGGCGTAGTTTTGAAGAGCCATATGGTGAGGTTATGTATTTTCATTACGGTAAGACAGAGGC
AATGGTACGTGCGAAAAAACATATTCAAAGTATGAACAAAAATGCGAAAGAACAAGGATTGATCGATTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(311-408)

Type III restriction enzyme, res subunit (ResIII)

(110-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.584

98.441

0.508
  comFA Latilactobacillus sakei subsp. sakei 23K

40

90.2

0.361