Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JCR32_RS09780 Genome accession   NZ_CP067069
Coordinates   1917016..1917303 (+) Length   95 a.a.
NCBI ID   WP_000648333.1    Uniprot ID   -
Organism   Bacillus sp. HNR-4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1912016..1922303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JCR32_RS09760 (JCR32_09740) - 1913193..1913390 (+) 198 WP_274431316.1 DUF4083 domain-containing protein -
  JCR32_RS09765 (JCR32_09745) - 1913422..1913883 (+) 462 WP_000024995.1 NUDIX hydrolase -
  JCR32_RS09770 (JCR32_09750) nadE 1913929..1914747 (-) 819 WP_000174879.1 ammonia-dependent NAD(+) synthetase -
  JCR32_RS09775 (JCR32_09755) - 1915019..1916899 (+) 1881 WP_274431317.1 ABC transporter permease -
  JCR32_RS09780 (JCR32_09760) abrB 1917016..1917303 (+) 288 WP_000648333.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JCR32_RS09785 (JCR32_09765) - 1917578..1918528 (+) 951 WP_274431318.1 serine protease -
  JCR32_RS09790 (JCR32_09770) ugpC 1918737..1919840 (-) 1104 WP_074607208.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  JCR32_RS09795 (JCR32_09775) - 1920109..1920972 (-) 864 WP_000615939.1 helix-turn-helix domain-containing protein -
  JCR32_RS09800 (JCR32_09780) - 1921041..1921901 (-) 861 WP_274431319.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10645.36 Da        Isoelectric Point: 5.1228

>NTDB_id=524805 JCR32_RS09780 WP_000648333.1 1917016..1917303(+) (abrB) [Bacillus sp. HNR-4]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEQFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=524805 JCR32_RS09780 WP_000648333.1 1917016..1917303(+) (abrB) [Bacillus sp. HNR-4]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCGTTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGCAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516