Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   JCR32_RS06515 Genome accession   NZ_CP067069
Coordinates   1282935..1283258 (-) Length   107 a.a.
NCBI ID   WP_000578883.1    Uniprot ID   A0A150B540
Organism   Bacillus sp. HNR-4     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1277935..1288258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JCR32_RS06490 (JCR32_06485) - 1278242..1279528 (+) 1287 WP_000245999.1 D-alanyl-D-alanine carboxypeptidase family protein -
  JCR32_RS06495 (JCR32_06490) - 1279723..1280292 (+) 570 WP_000767813.1 signal peptidase I -
  JCR32_RS06500 (JCR32_06495) - 1280353..1280943 (+) 591 WP_000172843.1 TasA family protein -
  JCR32_RS06505 (JCR32_06500) - 1281099..1281839 (+) 741 WP_274431034.1 DUF4047 domain-containing protein -
  JCR32_RS06510 (JCR32_06505) calY 1282264..1282857 (+) 594 WP_000053735.1 biofilm matrix protein CalY -
  JCR32_RS06515 (JCR32_06510) sinR 1282935..1283258 (-) 324 WP_000578883.1 helix-turn-helix domain-containing protein Regulator
  JCR32_RS06520 (JCR32_06515) - 1283338..1283472 (-) 135 WP_000276217.1 anti-repressor SinI family protein -
  JCR32_RS06525 (JCR32_06520) inhA1 1283816..1286203 (+) 2388 WP_274431035.1 M6 family metalloprotease immune inhibitor InhA1 -
  JCR32_RS06530 (JCR32_06525) - 1286375..1287742 (+) 1368 WP_274431036.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12358.20 Da        Isoelectric Point: 9.6248

>NTDB_id=524802 JCR32_RS06515 WP_000578883.1 1282935..1283258(-) (sinR) [Bacillus sp. HNR-4]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKENHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=524802 JCR32_RS06515 WP_000578883.1 1282935..1283258(-) (sinR) [Bacillus sp. HNR-4]
ATGATTGGAGAACGTATAAAACGCCTTCGCTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTCTACTTCATGATGAAACAACAAAGGAAAATCACTTAGACTCCGAATGGACACAACTCGTT
AAAGATGCGATGAGCTCCGGCGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150B540

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692