Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   T15_RS00210 Genome accession   NC_022665
Coordinates   28570..29352 (+) Length   260 a.a.
NCBI ID   WP_023368974.1    Uniprot ID   -
Organism   Streptococcus suis T15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23570..34352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  T15_RS00190 (T15_0019) mreD 24418..24906 (+) 489 WP_009908846.1 rod shape-determining protein MreD -
  T15_RS00195 (T15_0020) pcsB 24991..26247 (+) 1257 WP_023368970.1 peptidoglycan hydrolase PcsB -
  T15_RS00200 (T15_0021) - 26350..27318 (+) 969 WP_002935337.1 ribose-phosphate diphosphokinase -
  T15_RS00205 (T15_0022) - 27405..28583 (+) 1179 WP_023368972.1 pyridoxal phosphate-dependent aminotransferase -
  T15_RS00210 (T15_0023) recO 28570..29352 (+) 783 WP_023368974.1 DNA repair protein RecO Machinery gene
  T15_RS00215 (T15_0024) plsX 29349..30356 (+) 1008 WP_023368976.1 phosphate acyltransferase PlsX -
  T15_RS00220 (T15_0025) - 30349..30597 (+) 249 WP_014637254.1 phosphopantetheine-binding protein -
  T15_RS00225 (T15_0026) purC 30715..31422 (+) 708 WP_023368978.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30442.91 Da        Isoelectric Point: 5.4193

>NTDB_id=52480 T15_RS00210 WP_023368974.1 28570..29352(+) (recO) [Streptococcus suis T15]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSKLVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKN
INGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEVLTNIFEIQLLGRFGISLNFHECAFCHRVGL
PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKSEMKRKLRLFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=52480 T15_RS00210 WP_023368974.1 28570..29352(+) (recO) [Streptococcus suis T15]
ATGGAACGAATTGAAACCAGGGGATTAGTCCTATATAATCGGAATTTTCGAGAAGATGACAAGCTGGTCAAGATTTTTAC
AGAGAAGGCTGGCAAGCGAATGTTTTTCGTGAAACATGCATCTAAATCCAAGCTGGTAGCTTCTATCCAGCCTTTGACCT
ATGCGGATTTTATCGTTAAAATCAATGATGATGGGCTGTCTTATATCGAAGATTTTCATCAGGTACAGCCCTTTAAGAAT
ATTAACGGTGATATTTTCAAGCTTAGCTATGCTACCTACATCTTAGCCTTGGCAGATGCGGCCTTGCAGGACAAGGTCTA
TGACCCAGCTCTCTTTGCTTTTTTGGTCAAGACCTTGGACTTGATGGAGTCAGGTTTGGACTACGAAGTTCTGACCAATA
TCTTTGAAATTCAGCTCTTGGGTCGATTTGGGATCAGTCTGAATTTTCACGAGTGTGCTTTTTGTCATCGGGTTGGCTTG
CCTTTTGACTATTCCTACAAGTACAGCGGTGTCTTGTGTCCGCAACACTATCAACAAGATGAGCGACGGGCTTATCTGGA
TCCCAATGTTCCCTATCTACTTGATCAATTTCAGGCTATTTCCTTTGATGAGCTGGAAACCATTTCCATCAAGTCTGAGA
TGAAGCGAAAATTACGGCTTTTTATAGACCAGCTGTACGAGGAATATGTGGGGATTCACTTGAAATCCAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAAGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

69.323

96.538

0.669

Multiple sequence alignment