Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JCR32_RS00220 Genome accession   NZ_CP067069
Coordinates   40407..40691 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus sp. HNR-4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35407..45691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JCR32_RS00185 (JCR32_00185) tmk 35561..36187 (+) 627 WP_076871025.1 dTMP kinase -
  JCR32_RS00190 (JCR32_00190) holB 36223..37206 (+) 984 WP_274430609.1 DNA polymerase III subunit delta' -
  JCR32_RS00195 (JCR32_00195) - 37212..38039 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  JCR32_RS00200 (JCR32_00200) yabA 38054..38404 (+) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  JCR32_RS00205 (JCR32_00205) - 38525..39265 (+) 741 WP_274430610.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  JCR32_RS00210 (JCR32_00210) - 39252..39542 (+) 291 WP_274430611.1 GIY-YIG nuclease family protein -
  JCR32_RS00215 (JCR32_00215) rsmI 39511..40386 (+) 876 WP_046199537.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  JCR32_RS00220 (JCR32_00220) abrB 40407..40691 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JCR32_RS00225 (JCR32_00225) metG 41182..43191 (+) 2010 WP_274430612.1 methionine--tRNA ligase -
  JCR32_RS00230 (JCR32_00230) - 43357..44124 (+) 768 WP_274430613.1 TatD family hydrolase -
  JCR32_RS00235 (JCR32_00235) rnmV 44340..44897 (+) 558 WP_000692830.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=524787 JCR32_RS00220 WP_000843036.1 40407..40691(-) (abrB) [Bacillus sp. HNR-4]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=524787 JCR32_RS00220 WP_000843036.1 40407..40691(-) (abrB) [Bacillus sp. HNR-4]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCGATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAGCTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851