Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JGY86_RS16895 Genome accession   NZ_CP067066
Coordinates   3567736..3568359 (-) Length   207 a.a.
NCBI ID   WP_200382039.1    Uniprot ID   -
Organism   Raoultella sp. XY-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3562736..3573359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGY86_RS16880 (JGY86_16880) helD 3562972..3565026 (-) 2055 WP_032717632.1 DNA helicase IV -
  JGY86_RS16885 (JGY86_16885) - 3565149..3565595 (+) 447 WP_004860167.1 YccF domain-containing protein -
  JGY86_RS16890 (JGY86_16890) yccS 3565613..3567748 (+) 2136 WP_004860163.1 YccS family putative transporter -
  JGY86_RS16895 (JGY86_16895) sxy/tfoX 3567736..3568359 (-) 624 WP_200382039.1 TfoX/Sxy family DNA transformation protein Regulator
  JGY86_RS16900 (JGY86_16900) sulA 3568821..3569330 (+) 510 WP_004860159.1 SOS-induced cell division inhibitor SulA -
  JGY86_RS16905 (JGY86_16905) ompA 3569683..3570753 (+) 1071 WP_004860157.1 porin OmpA -
  JGY86_RS16910 (JGY86_16910) matP 3570862..3571314 (-) 453 WP_004860155.1 macrodomain Ter protein MatP -
  JGY86_RS16915 (JGY86_16915) - 3571500..3573257 (+) 1758 WP_004860153.1 Lon protease family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23337.86 Da        Isoelectric Point: 9.3108

>NTDB_id=524775 JGY86_RS16895 WP_200382039.1 3567736..3568359(-) (sxy/tfoX) [Raoultella sp. XY-1]
MKKISSLRFHQLQECLSPLGKISCRPLFGGYSLAIDDTVFAMVAEGEIYLKICEQSAEYRVVHATPLLTMRKNGRPELLK
YYQVDETLWGDSKTLFNLSASSLQSARNEKHRQRASGRLKDLPNISFHMELLLINAGVSDENMLRQFGAEKVWLKLRESN
KALTLNVLYALEGAIAGVHSAALPTQRRQELKVWADSQHKSIDAYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=524775 JGY86_RS16895 WP_200382039.1 3567736..3568359(-) (sxy/tfoX) [Raoultella sp. XY-1]
ATGAAGAAAATTTCATCTTTACGGTTCCATCAACTCCAGGAATGTTTATCTCCACTCGGCAAAATAAGCTGTCGCCCGCT
GTTTGGGGGCTATAGCCTTGCCATAGACGATACCGTTTTTGCCATGGTTGCCGAGGGCGAAATCTATCTTAAAATTTGTG
AGCAGAGCGCGGAATATCGCGTTGTGCATGCTACCCCTCTTTTGACGATGCGGAAAAATGGTCGCCCGGAATTACTGAAA
TATTATCAGGTTGACGAGACTCTCTGGGGGGATAGCAAAACGCTTTTCAATCTATCGGCGTCCTCATTACAAAGTGCACG
TAATGAAAAGCACCGACAGCGCGCGTCCGGAAGATTAAAAGATCTCCCGAACATCAGTTTTCACATGGAGCTGCTGTTGA
TTAACGCGGGCGTGAGCGATGAAAACATGCTCCGTCAGTTTGGGGCAGAGAAAGTCTGGCTGAAATTGCGCGAGTCAAAT
AAAGCCCTCACCCTGAATGTTCTCTATGCGCTGGAAGGCGCGATTGCCGGCGTGCATTCCGCAGCGCTCCCGACGCAGCG
GCGTCAGGAGCTTAAGGTTTGGGCCGACAGCCAGCACAAGAGTATCGATGCTTACTCGGGTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.284

95.169

0.498