Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   K5O18_RS09490 Genome accession   NZ_CP081939
Coordinates   1907168..1907674 (-) Length   168 a.a.
NCBI ID   WP_035685396.1    Uniprot ID   A0A0F5EQV1
Organism   Avibacterium paragallinarum strain p4chr1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1902168..1912674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5O18_RS09465 (K5O18_09465) - 1903110..1903250 (-) 141 WP_165816415.1 hypothetical protein -
  K5O18_RS09470 (K5O18_09470) - 1903281..1904594 (+) 1314 WP_110479111.1 NCS2 family permease -
  K5O18_RS09475 (K5O18_09475) comE1/comEA 1904856..1905212 (+) 357 WP_110479110.1 helix-hairpin-helix domain-containing protein Machinery gene
  K5O18_RS09480 (K5O18_09480) rdgB 1905350..1905946 (+) 597 WP_110479109.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  K5O18_RS09485 (K5O18_09485) hemW 1905946..1907100 (+) 1155 WP_110479108.1 radical SAM family heme chaperone HemW -
  K5O18_RS09490 (K5O18_09490) luxS 1907168..1907674 (-) 507 WP_035685396.1 S-ribosylhomocysteine lyase Regulator
  K5O18_RS09495 (K5O18_09495) - 1907897..1908355 (-) 459 WP_110479107.1 YqaA family protein -
  K5O18_RS09500 (K5O18_09500) - 1908348..1908956 (-) 609 WP_110479106.1 sugar O-acetyltransferase -
  K5O18_RS09505 (K5O18_09505) - 1908957..1909559 (-) 603 WP_035685401.1 beta-phosphoglucomutase family hydrolase -
  K5O18_RS09510 (K5O18_09510) - 1909702..1910079 (+) 378 WP_110479105.1 hypothetical protein -
  K5O18_RS09515 (K5O18_09515) ispF 1910212..1910688 (+) 477 WP_110479104.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  K5O18_RS09520 (K5O18_09520) truD 1910692..1911699 (+) 1008 WP_110479103.1 tRNA pseudouridine(13) synthase TruD -
  K5O18_RS09525 (K5O18_09525) surE 1911708..1912448 (+) 741 WP_110479102.1 5'/3'-nucleotidase SurE -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 19094.95 Da        Isoelectric Point: 5.5568

>NTDB_id=524719 K5O18_RS09490 WP_035685396.1 1907168..1907674(-) (luxS) [Avibacterium paragallinarum strain p4chr1]
MPLLDSFKVDHTKMNAPAVRVAKIMRTPKGDDITIFDLRFCIPNKEILPPKGIHTLEHLFAGFMRDHLNSEQVEIIDISP
MGCRTGFYMSLIGRPNEQQVVTAWLAAMKDILQVQNQNDIPELNEYQCGTYTEHSLDEAHQIARNILARGVGVNRNDDLL
LDERLLAQ

Nucleotide


Download         Length: 507 bp        

>NTDB_id=524719 K5O18_RS09490 WP_035685396.1 1907168..1907674(-) (luxS) [Avibacterium paragallinarum strain p4chr1]
ATGCCGTTACTTGATAGTTTTAAAGTCGATCATACGAAGATGAATGCTCCCGCCGTGCGTGTTGCAAAAATAATGCGTAC
ACCAAAAGGTGATGACATTACCATTTTCGATTTACGTTTTTGTATTCCAAATAAAGAAATTTTACCGCCGAAAGGGATTC
ATACTCTTGAACATCTTTTTGCAGGTTTTATGAGGGATCACTTGAATAGTGAGCAAGTTGAGATTATTGACATTTCTCCA
ATGGGGTGCCGTACAGGGTTTTATATGTCATTAATTGGTAGACCGAATGAGCAACAAGTCGTAACGGCTTGGCTTGCGGC
AATGAAAGATATTCTACAAGTGCAAAATCAAAATGATATTCCTGAATTAAATGAATACCAATGTGGCACTTATACAGAGC
ATTCCTTAGATGAAGCTCATCAGATTGCACGCAATATTCTTGCTCGTGGTGTTGGTGTGAATAGAAATGACGATTTATTG
TTAGATGAGCGTTTGCTTGCACAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F5EQV1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.494

98.81

0.726