Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   K5O18_RS04595 Genome accession   NZ_CP081939
Coordinates   922999..923997 (+) Length   332 a.a.
NCBI ID   WP_110479897.1    Uniprot ID   A0AAE5TG77
Organism   Avibacterium paragallinarum strain p4chr1     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 917999..928997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5O18_RS04580 (K5O18_04580) - 919453..920388 (-) 936 WP_110479895.1 nucleoside hydrolase -
  K5O18_RS04585 (K5O18_04585) - 920686..921951 (+) 1266 WP_035684956.1 NupC/NupG family nucleoside CNT transporter -
  K5O18_RS04590 (K5O18_04590) rbsK 922033..922959 (+) 927 WP_110479896.1 ribokinase -
  K5O18_RS04595 (K5O18_04595) cytR 922999..923997 (+) 999 WP_110479897.1 substrate-binding domain-containing protein Regulator
  K5O18_RS04600 (K5O18_04600) - 924091..925632 (+) 1542 WP_110479898.1 AbgT family transporter -
  K5O18_RS04605 (K5O18_04605) pepT 925651..926871 (+) 1221 WP_110479899.1 peptidase T -
  K5O18_RS04610 (K5O18_04610) ettA 927179..928849 (-) 1671 WP_222593801.1 energy-dependent translational throttle protein EttA -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37350.12 Da        Isoelectric Point: 7.7923

>NTDB_id=524699 K5O18_RS04595 WP_110479897.1 922999..923997(+) (cytR) [Avibacterium paragallinarum strain p4chr1]
MATMKDIARIAQVSTSTVSHVINNTGYVSDAMRERIMKVVKELNYRPSVLARSLKIKQTKTLGMLVTATNNPFFAEVVSG
VEQYCNQHDYNLIISSLDGNEERLEQNIQTLIQKQVDGLLLMYSDSRHSFLKQLDVALPMVIMDWWPTALSADKIYENSE
LGAYLATKCLIEQGHKAIAIITGNLNKSLAQNRLQGYKKALNEHQLAIRDEWIIESHFDFEGGVEGMKKLLQAGKRPTAV
FACSDTIAVGVYQVAWQNGLRIPQDLSVIGYDDITLAQYLAPPLTTIHQPKAELGKLAVETLLERIKNPHKSEQSILLEP
KLIWRDSVQCRK

Nucleotide


Download         Length: 999 bp        

>NTDB_id=524699 K5O18_RS04595 WP_110479897.1 922999..923997(+) (cytR) [Avibacterium paragallinarum strain p4chr1]
ATGGCAACAATGAAAGATATTGCACGCATTGCACAGGTTTCAACCTCCACCGTGTCGCACGTGATTAATAATACGGGTTA
TGTAAGCGATGCAATGCGAGAACGCATAATGAAGGTTGTCAAAGAACTGAATTATCGCCCTTCCGTCTTGGCGAGAAGCC
TGAAAATCAAGCAAACCAAAACCTTGGGAATGTTGGTTACCGCAACCAACAACCCTTTTTTCGCGGAAGTGGTGAGTGGC
GTTGAGCAATATTGTAATCAGCACGATTATAATCTGATTATTTCAAGCCTAGATGGTAATGAGGAACGCTTAGAACAAAA
TATTCAAACGCTCATTCAAAAACAGGTGGACGGCTTGTTGTTAATGTATTCTGATAGCCGTCATTCCTTTCTTAAGCAAC
TTGATGTTGCCTTGCCAATGGTGATTATGGACTGGTGGCCAACGGCATTAAGTGCGGATAAAATTTATGAAAATTCTGAA
CTTGGTGCGTATCTTGCGACAAAATGCTTAATTGAGCAAGGGCATAAAGCGATTGCGATTATCACCGGAAATCTGAATAA
ATCCCTCGCACAAAATCGTTTGCAAGGCTATAAAAAAGCCTTAAACGAACATCAGTTAGCCATTCGTGATGAATGGATTA
TCGAAAGCCATTTTGATTTTGAAGGTGGCGTGGAAGGAATGAAAAAGCTGTTACAAGCGGGCAAACGGCCTACGGCTGTG
TTTGCGTGCAGCGACACGATTGCGGTAGGTGTTTATCAAGTGGCGTGGCAAAATGGTTTGCGTATTCCGCAAGATCTTTC
TGTGATTGGCTATGATGATATTACCCTTGCCCAATATCTCGCCCCACCGCTCACCACCATTCATCAACCTAAAGCCGAAT
TAGGCAAACTTGCGGTGGAAACGCTGTTAGAACGTATTAAAAACCCCCATAAAAGCGAACAATCTATTTTGCTAGAACCT
AAATTAATTTGGCGGGATTCTGTGCAGTGCAGAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(170-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAE5TG77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

38.298

99.096

0.38
  cytR Vibrio parahaemolyticus RIMD 2210633

37.805

98.795

0.373