Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   N149_RS05750 Genome accession   NC_022660
Coordinates   1159194..1159769 (+) Length   191 a.a.
NCBI ID   WP_023361814.1    Uniprot ID   -
Organism   Campylobacter coli 15-537360     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1154194..1164769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N149_RS05730 (N149_0573) - 1154622..1155875 (+) 1254 WP_023361818.1 major outer membrane protein -
  N149_RS05735 (N149_0572) dnaJ 1156015..1157139 (-) 1125 WP_023361816.1 molecular chaperone DnaJ -
  N149_RS05740 (N149_0571) - 1157286..1157957 (+) 672 WP_002776259.1 response regulator transcription factor -
  N149_RS05745 (N149_0570) - 1157954..1159204 (+) 1251 WP_002776258.1 ArsS family sensor histidine kinase -
  N149_RS05750 (N149_0569) recR 1159194..1159769 (+) 576 WP_023361814.1 recombination mediator RecR Machinery gene
  N149_RS05755 (N149_0568) - 1159771..1160304 (-) 534 WP_002780939.1 HyaD/HybD family hydrogenase maturation endopeptidase -
  N149_RS05760 (N149_0567) cybH 1160301..1160993 (-) 693 WP_002790049.1 Ni/Fe-hydrogenase, b-type cytochrome subunit -
  N149_RS05765 (N149_0566) - 1161005..1162720 (-) 1716 WP_002776252.1 nickel-dependent hydrogenase large subunit -
  N149_RS05770 (N149_0565) - 1162726..1163865 (-) 1140 WP_002776249.1 hydrogenase small subunit -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21792.19 Da        Isoelectric Point: 6.1088

>NTDB_id=52469 N149_RS05750 WP_023361814.1 1159194..1159769(+) (recR) [Campylobacter coli 15-537360]
MTHKGIEKFNELVESFAKLPTIGKKTAIRLAYHICTGNQLEGMKLAHNIENAIRFIKPCQQCGSLSENELCEICTDDERD
KNYLCIVQSPKDVLVIEESKSYGGLYFVLDELNDEKLAQLRQMILKLQSKELIFAFTHNLNSDAMIFYIEDRLKDLNLQF
SKIAQGIPSGVNLENVDFISLNKAINFRTKV

Nucleotide


Download         Length: 576 bp        

>NTDB_id=52469 N149_RS05750 WP_023361814.1 1159194..1159769(+) (recR) [Campylobacter coli 15-537360]
ATGACGCATAAGGGTATAGAAAAATTTAACGAACTTGTAGAAAGTTTTGCAAAATTACCCACTATCGGTAAAAAAACTGC
TATTCGCCTTGCTTATCATATTTGCACAGGAAATCAACTCGAAGGTATGAAGCTCGCACACAATATAGAAAATGCTATAC
GTTTTATAAAACCCTGTCAACAATGCGGGTCTTTAAGCGAAAACGAACTTTGTGAAATTTGCACCGATGATGAAAGGGAT
AAAAATTACTTATGTATAGTGCAAAGCCCTAAAGATGTTTTGGTTATAGAAGAGAGTAAAAGTTATGGGGGCTTGTATTT
TGTTTTAGATGAATTAAACGATGAAAAGCTTGCTCAATTAAGACAAATGATACTAAAATTACAAAGCAAAGAACTCATTT
TTGCTTTCACTCATAATTTAAATTCCGATGCAATGATTTTTTATATAGAAGATAGGCTTAAAGATTTAAATTTACAATTT
AGCAAAATCGCACAAGGTATTCCAAGTGGAGTAAATTTAGAAAATGTTGACTTTATATCTCTAAACAAAGCCATCAATTT
TCGCACCAAAGTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(42-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

36.649

100

0.366

Multiple sequence alignment