Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JHW31_RS10940 Genome accession   NZ_CP067044
Coordinates   2444644..2445993 (+) Length   449 a.a.
NCBI ID   WP_027375603.1    Uniprot ID   A0A5R9PLF9
Organism   Chryseobacterium indologenes strain 3125     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2439644..2450993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHW31_RS10925 (JHW31_10925) yidC 2440144..2441943 (-) 1800 WP_027375606.1 membrane protein insertase YidC -
  JHW31_RS10930 (JHW31_10930) - 2442122..2443729 (-) 1608 WP_027375605.1 CTP synthase -
  JHW31_RS10935 (JHW31_10935) - 2443935..2444504 (-) 570 WP_123864996.1 YceI family protein -
  JHW31_RS10940 (JHW31_10940) radA 2444644..2445993 (+) 1350 WP_027375603.1 DNA repair protein RadA Machinery gene
  JHW31_RS10945 (JHW31_10945) - 2446136..2446723 (+) 588 WP_123864995.1 ACP phosphodiesterase -
  JHW31_RS10950 (JHW31_10950) - 2446724..2447224 (-) 501 WP_123864994.1 DUF6702 family protein -
  JHW31_RS10955 (JHW31_10955) - 2447298..2447876 (+) 579 WP_034736437.1 HupE/UreJ family protein -
  JHW31_RS10960 (JHW31_10960) - 2447944..2450331 (+) 2388 WP_123864993.1 M1 family metallopeptidase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49901.52 Da        Isoelectric Point: 6.6918

>NTDB_id=524685 JHW31_RS10940 WP_027375603.1 2444644..2445993(+) (radA) [Chryseobacterium indologenes strain 3125]
MAKLKTAYFCQNCGSQYSQWMGQCKNCGQWNTLVEEIVEKPSHKTPPFSKSKQHVINIVEVETSEEPRIKTPSEELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKIFYVSGEESASQIKMRADRLTDIQNPNCFLFTETSLEKILHEAKKL
EPDFIIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENSTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTSEIGIYEMISQGLKEIKNPSEILITKKLEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
CTGFDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVIASVLSSNEDIAISEHYCFAGEIGLSGEIRPV
AQIEQRITEAEKLGYEKIFVSNLNKIPKRKFGIKIEEVSKIEDFHERLF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=524685 JHW31_RS10940 WP_027375603.1 2444644..2445993(+) (radA) [Chryseobacterium indologenes strain 3125]
ATGGCAAAACTGAAAACAGCATATTTCTGTCAAAACTGCGGAAGTCAATATTCCCAATGGATGGGACAATGCAAAAACTG
TGGACAATGGAATACTTTAGTAGAAGAAATTGTTGAAAAACCTTCTCATAAAACTCCTCCCTTTTCAAAATCCAAGCAAC
ATGTTATTAATATTGTTGAAGTGGAAACCAGTGAGGAACCGAGAATAAAAACACCTTCTGAAGAACTGAACCGTGTTTTG
GGTGGAGGAATTGTTCTGGGGTCGGTAACCTTAATTGGAGGGGAACCCGGAATAGGAAAATCTACACTTCTGCTTCAGCT
TGCCTTAAAGATGAAGAAAAAAATCTTTTATGTCTCCGGGGAAGAAAGTGCCTCACAGATTAAAATGAGGGCAGACAGAC
TTACGGACATCCAAAATCCCAATTGTTTTCTTTTTACCGAAACCTCCCTTGAAAAAATACTTCACGAAGCCAAAAAACTG
GAACCTGATTTCATAATCATCGACTCTATTCAGACGCTTCAGTCTCAACTGATCGAAAGCTCTCCGGGAACGGTTTCACA
GATCCGCGAATGCTCCAATGAAATCATTAAATATGCCAAGGAAAACAGCACTCCCGTATTTCTGGTAGGTCACATTACAA
AAGATGGCCAGATTGCAGGCCCGAAAGTACTGGAACACATGGTTGATGTTGTCCTGAATTTTGACGGAGACAGAAATCAC
CTTTTCAGGCTTTTGAGAGCCAATAAAAACCGTTTCGGTTCCACTTCTGAAATCGGGATCTATGAAATGATTTCCCAGGG
ATTGAAAGAAATCAAAAACCCTTCGGAAATCCTGATTACGAAAAAACTTGAGGAATTATCCGGAAACTCGGTTGCTGTTA
CCCTCGAAGGAAACCGGCCTATGCTTCTGGAAATTCAGGCTTTGGTAAGTACAGCGGTTTACGGTACACCACAAAGAAGC
TGCACAGGATTTGATTCTAAAAGGCTCAATATGCTTCTTGCTGTTTTGGAAAAACGTGCCGGATTTCAACTTGGTGCAAA
AGACGTTTTCTTAAACATTACCGGAGGAATCAAAACAGACGACCCGGCACTGGATCTTGCCGTTATTGCTTCAGTTTTAT
CATCCAATGAAGATATTGCAATTTCCGAACACTACTGCTTTGCAGGAGAAATAGGATTAAGCGGGGAAATCCGCCCGGTC
GCACAAATTGAGCAACGAATTACTGAAGCTGAAAAACTGGGATACGAAAAAATATTTGTATCCAACCTTAATAAAATACC
TAAAAGAAAATTTGGAATCAAGATTGAAGAAGTGAGTAAGATTGAGGATTTCCATGAAAGACTTTTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(338-423)

AAA domain (AAA_25)

(64-216)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5R9PLF9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.336

100

0.497
  radA Streptococcus pneumoniae Rx1

47.807

100

0.486
  radA Streptococcus pneumoniae D39

47.807

100

0.486
  radA Streptococcus pneumoniae R6

47.807

100

0.486
  radA Streptococcus pneumoniae TIGR4

47.807

100

0.486
  radA Streptococcus mitis NCTC 12261

47.807

100

0.486
  radA Streptococcus mitis SK321

49.645

94.209

0.468