Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   JHW31_RS10015 Genome accession   NZ_CP067044
Coordinates   2203030..2203683 (+) Length   217 a.a.
NCBI ID   WP_027374733.1    Uniprot ID   -
Organism   Chryseobacterium indologenes strain 3125     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2198030..2208683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHW31_RS10000 (JHW31_10000) aceA 2198370..2199650 (-) 1281 WP_027374730.1 isocitrate lyase -
  JHW31_RS10005 (JHW31_10005) aceB 2199763..2201337 (-) 1575 WP_061085149.1 malate synthase A -
  JHW31_RS10010 (JHW31_10010) - 2201464..2202942 (+) 1479 WP_061085150.1 helix-turn-helix domain-containing protein -
  JHW31_RS10015 (JHW31_10015) comF 2203030..2203683 (+) 654 WP_027374733.1 ComF family protein Machinery gene
  JHW31_RS10020 (JHW31_10020) - 2203812..2204498 (+) 687 WP_123865059.1 alpha/beta fold hydrolase -
  JHW31_RS10025 (JHW31_10025) upp 2204500..2205150 (-) 651 WP_123865058.1 uracil phosphoribosyltransferase -
  JHW31_RS10030 (JHW31_10030) der 2205306..2206616 (-) 1311 WP_027374736.1 ribosome biogenesis GTPase Der -
  JHW31_RS10040 (JHW31_10040) - 2207194..2208129 (+) 936 WP_034735440.1 hypothetical protein -
  JHW31_RS10045 (JHW31_10045) - 2208119..2208649 (+) 531 WP_034735439.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25454.48 Da        Isoelectric Point: 8.0805

>NTDB_id=524682 JHW31_RS10015 WP_027374733.1 2203030..2203683(+) (comF) [Chryseobacterium indologenes strain 3125]
MILDLLFPNRCIHCNRMIDAELLVCDLCFDQIHFTHYNYFENNPIREKCSLLFPVENTFALIQFEKENLSRKLIHELKYK
GREKVGKILAEWTTEVVDFKNRKPDLLVSVPLHPKKLRERGYNQLHLFTETLSEFYRIPFDHQLIKRNHYSKAQALKDKK
HRLETVNTFSLTQPVSGQHILLIDDVFTTGNTISSIAWEILNSGNNRVSVLVMAIDV

Nucleotide


Download         Length: 654 bp        

>NTDB_id=524682 JHW31_RS10015 WP_027374733.1 2203030..2203683(+) (comF) [Chryseobacterium indologenes strain 3125]
ATGATACTTGACCTATTATTTCCTAACCGCTGTATTCATTGCAACAGAATGATTGATGCTGAGTTATTGGTATGTGATTT
ATGTTTTGATCAGATTCATTTTACGCATTACAATTATTTTGAAAACAATCCTATCCGCGAAAAATGCAGCCTGCTCTTTC
CTGTTGAGAATACCTTTGCTCTGATACAGTTTGAAAAAGAAAACCTGAGCAGGAAGCTTATCCATGAGCTCAAATATAAA
GGAAGGGAGAAAGTCGGAAAAATTCTTGCAGAATGGACCACGGAAGTAGTGGATTTTAAAAACCGGAAACCCGATCTCCT
GGTAAGCGTTCCTCTTCATCCGAAAAAATTAAGAGAAAGGGGATATAATCAGCTTCACCTTTTCACGGAGACATTGTCGG
AATTTTACAGGATTCCGTTTGATCATCAGCTTATCAAAAGAAATCACTATTCAAAAGCCCAGGCATTAAAAGATAAGAAA
CACAGGCTGGAAACTGTTAACACCTTTTCTTTAACCCAACCTGTTAGCGGGCAACATATTTTACTGATCGATGATGTCTT
TACTACCGGCAATACCATCTCTTCTATAGCCTGGGAGATTTTAAATTCCGGCAACAATAGGGTGAGTGTATTGGTAATGG
CTATAGATGTTTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

51.389

99.539

0.512