Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JHX84_RS18245 Genome accession   NZ_CP067043
Coordinates   3710887..3711171 (-) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain 19573-3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3705887..3716171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHX84_RS18225 (JHX84_18220) ade 3705993..3707726 (-) 1734 WP_052585832.1 adenine deaminase -
  JHX84_RS18230 (JHX84_18225) ktrC 3707875..3708540 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  JHX84_RS18235 (JHX84_18230) - 3708581..3709408 (-) 828 WP_069473389.1 gamma-glutamylcyclotransferase -
  JHX84_RS18240 (JHX84_18235) - 3709410..3710714 (-) 1305 WP_014304932.1 ATP-binding protein -
  JHX84_RS18245 (JHX84_18240) abrB 3710887..3711171 (-) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JHX84_RS18250 (JHX84_18245) mreBH 3711440..3712447 (+) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  JHX84_RS18255 (JHX84_18250) - 3712519..3712653 (+) 135 WP_003154559.1 protein YkpC -
  JHX84_RS18260 (JHX84_18255) - 3712754..3713986 (+) 1233 WP_025851469.1 aminopeptidase -
  JHX84_RS18265 (JHX84_18260) - 3714016..3714924 (-) 909 WP_069473388.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=524668 JHX84_RS18245 WP_003154557.1 3710887..3711171(-) (abrB) [Bacillus velezensis strain 19573-3]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=524668 JHX84_RS18245 WP_003154557.1 3710887..3711171(-) (abrB) [Bacillus velezensis strain 19573-3]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543